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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.119315 (22 seq.)
>W131036414
ALVP01000013
Cyanobacteriota
Nodosilinea nodulosa PCC 7104 [ALVP]
222407
222326
-
Leu
GAG
[ENA]
¡û
>C021079
AP008231
Cyanobacteriota
Synechococcus elongatus PCC 6301 [AP008231]
199481
199562
+
Leu
GAG
[Ensembl]
¡û
>WENV183748558
PPFU01052879
[PPFU] hypolithon metagenome; Antarctic Hypolithon
156
237
+
Leu
GAG
[ENA]
¡û
>WENV170298130
CESF01052124
[CESF] marine metagenome genome assembly TARA_093_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
361
442
+
Leu
GAG
[ENA]
¡û
>WENV170315045
CESO01058321
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1295
1376
+
Leu
GAG
[ENA]
¡û
>WENV170387234
CETY01367388
[CETY] marine metagenome genome assembly TARA_133_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
699
618
-
Leu
GAG
[ENA]
¡û
>C181005017
AP018281
Cyanobacteriota
Chondrocystis sp. NIES-4102 [AP018281]
2968260
2968342
+
Leu
GAG
-
¡û
>C191099561
CP033061
Cyanobacteriota
Synechococcus elongatus UTEX 3055 [CP033061]
2465934
2466015
+
Leu
GAG
-
¡û
>W09101119
AADZ01000001
Cyanobacteriota
Synechococcus elongatus PCC 7942 [AADZ]
709940
709859
-
Leu
GAG
[ENA]
¡û
>W1910018051
BDQK01000001
Cyanobacteriota
Aphanothece sacrum FPU1 [BDQK]
399507
399426
-
Leu
GAG
[ENA]
¡û
>W1910018119
BDQL01000083
Cyanobacteriota
Aphanothece sacrum FPU3 [BDQL]
34135
34216
+
Leu
GAG
[ENA]
¡û
>W1911638258
PVWF01000148
Cyanobacteriota
Pleurocapsa sp. CCALA 161 [PVWF]
3457
3374
-
Leu
GAG
[ENA]
¡û
>W1810398629
PYER01000111
Cyanobacteriota
filamentous cyanobacterium CCT1 [PYER]
17024
17105
+
Leu
GAG
[ENA]
¡û
>W1810400247
PYFY01000132
Cyanobacteriota
filamentous cyanobacterium CCP4 [PYFY]
1887
1806
-
Leu
GAG
[ENA]
¡û
>C151009155
CP006471
Cyanobacteriota
Synechococcus elongatus UTEX 2973 [CP006471]
1843147
1843228
+
Leu
GAG
[Ensembl]
¡û
>W2010078199
BDQK01000001
Cyanobacteriota
Aphanothece sacrum FPU1 [BDQK]
399507
399426
-
Leu
GAG
[ENA]
¡û
>W2010078267
BDQL01000083
Cyanobacteriota
Aphanothece sacrum FPU3 [BDQL]
34135
34216
+
Leu
GAG
[ENA]
¡û
>W2011229984
PVWF01000148
Cyanobacteriota
Pleurocapsa sp. CCALA 161 [PVWF]
3457
3374
-
Leu
GAG
[ENA]
¡û
>W2110232846
JACJSY010000002
Cyanobacteriota
Synechococcus elongatus FACHB-242 [JACJSY]
517256
517175
-
Leu
GAG
[ENA]
¡û
>W2110233978
JACJTX010000003
Cyanobacteriota
Synechococcus elongatus PCC 7942 = FACHB-805 [JACJTX]
13410
13491
+
Leu
GAG
[ENA]
¡û
>C211072413
CP047936
Cyanobacteriota
Synechococcus sp. BIOS-U3-1 [CP047936]
2275633
2275552
-
Leu
GAG
-
¡û
>W1511324001
JQFA01000002
Cyanobacteriota
Leptolyngbya sp. KIOST-1 [JQFA]
1741597
1741678
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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