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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.119593 (75 seq.)
>W1711105008
LTQJ01000030
Actinomycetota
Rothia sp. HMSC061D12 [LTQJ]
7410
7326
-
Tyr
GTA
[ENA]
¡û
>W131110228
APJM01000011
Actinomycetota
Leucobacter sp. UCD-THU [APJM]
329716
329800
+
Tyr
GTA
[ENA]
¡û
>W131218366
ATXP01000011
Actinomycetota
Nesterenkonia alba DSM 19423 [ATXP]
13051
13135
+
Tyr
GTA
[ENA]
¡û
>W131218520
ATXU01000007
Actinomycetota
Leucobacter chironomi DSM 19883 [ATXU]
173325
173409
+
Tyr
GTA
[ENA]
¡û
>WENV180007619
FLSA01124231
[FLSA] metagenome; saliva
1441
1523
+
Tyr
GTA
[ENA]
¢þ
>WENV180007714
FLSA01215643
[FLSA] metagenome; saliva
59
141
+
Tyr
GTA
[ENA]
¢þ
>WENV180439993
OBWU01000829
[OBWU] human gut metagenome; faeces
3263
3345
+
Tyr
GTA
[ENA]
¢þ
>WENV180459982
OBXY01002404
[OBXY] human gut metagenome; faeces
395
313
-
Tyr
GTA
[ENA]
¢þ
>WENV180492818
OBZX01003017
[OBZX] human gut metagenome; faeces
1087
1005
-
Tyr
GTA
[ENA]
¢þ
>WENV180551543
OCJG01000466
[OCJG] human oral metagenome; human oral
151
69
-
Tyr
GTA
[ENA]
¢þ
>WENV180717435
ODGE01000005
[ODGE] human metagenome; G_DNA_Buccal mucosa
181220
181138
-
Tyr
GTA
[ENA]
¢þ
>WENV180774487
ODIJ01027070
[ODIJ] human metagenome; G_DNA_Tongue dorsum
478
396
-
Tyr
GTA
[ENA]
¢þ
>WENV180774494
ODIJ01027533
[ODIJ] human metagenome; G_DNA_Tongue dorsum
429
347
-
Tyr
GTA
[ENA]
¢þ
>WENV180783551
ODIQ01011367
[ODIQ] human metagenome; G_DNA_Tongue dorsum
1050
1132
+
Tyr
GTA
[ENA]
¢þ
>WENV180820084
ODJR01001771
[ODJR] human metagenome; G_DNA_Tongue dorsum
5314
5232
-
Tyr
GTA
[ENA]
¢þ
>WENV180830562
ODKB01005833
[ODKB] human metagenome; G_DNA_Tongue dorsum
137
55
-
Tyr
GTA
[ENA]
¢þ
>WENV180852722
ODKW01004256
[ODKW] human metagenome; G_DNA_Tongue dorsum
3670
3752
+
Tyr
GTA
[ENA]
¢þ
>WENV180857967
ODLC01000279
[ODLC] human metagenome; G_DNA_Tongue dorsum
11508
11426
-
Tyr
GTA
[ENA]
¢þ
>WENV180896230
ODNI01000219
[ODNI] human metagenome; G_DNA_Tongue dorsum
41480
41562
+
Tyr
GTA
[ENA]
¢þ
>WENV180901583
ODOK01000744
[ODOK] human metagenome; G_DNA_Tongue dorsum
5971
6053
+
Tyr
GTA
[ENA]
¢þ
>WENV180914722
ODSZ01003679
[ODSZ] human metagenome; G_DNA_Buccal mucosa
1322
1404
+
Tyr
GTA
[ENA]
¢þ
>WENV180928993
ODTN01000280
[ODTN] human metagenome; G_DNA_Tongue dorsum
6182
6264
+
Tyr
GTA
[ENA]
¢þ
>WENV180946066
ODUD01004781
[ODUD] human metagenome; G_DNA_Tongue dorsum
911
829
-
Tyr
GTA
[ENA]
¢þ
>WENV181058645
ODYL01022873
[ODYL] human metagenome; G_DNA_Tongue dorsum
1161
1243
+
Tyr
GTA
[ENA]
¢þ
>WENV181073983
OEAO01002071
[OEAO] human metagenome; G_DNA_Tongue dorsum
10355
10437
+
Tyr
GTA
[ENA]
¢þ
>WENV181074317
OEAO01005710
[OEAO] human metagenome; G_DNA_Tongue dorsum
4585
4667
+
Tyr
GTA
[ENA]
¢þ
>WENV181075013
OEAO01053692
[OEAO] human metagenome; G_DNA_Tongue dorsum
29
111
+
Tyr
GTA
[ENA]
¢þ
>WENV181078194
OEAQ01020418
[OEAQ] human metagenome; G_DNA_Buccal mucosa
91
9
-
Tyr
GTA
[ENA]
¢þ
>WENV181085294
OEAX01004873
[OEAX] human metagenome; G_DNA_Tongue dorsum
1951
2033
+
Tyr
GTA
[ENA]
¢þ
>WENV181112980
OEEL01007794
[OEEL] human metagenome; G_DNA_Tongue dorsum
2790
2708
-
Tyr
GTA
[ENA]
¢þ
>WENV181134756
OEGG01000118
[OEGG] human metagenome; G_DNA_Tongue dorsum
34356
34438
+
Tyr
GTA
[ENA]
¢þ
>WENV181175386
OEJQ01001137
[OEJQ] human metagenome; G_DNA_Tongue dorsum
29
111
+
Tyr
GTA
[ENA]
¢þ
>WENV181187312
OENY01001522
[OENY] human gut metagenome; human gut
1971
2053
+
Tyr
GTA
[ENA]
¢þ
>W141188653
AYMV01000005
Actinomycetota
Leucobacter sp. PH1c [AYMV]
4612
4694
+
Tyr
GTA
[ENA]
¡û
>WENV182943782
OKVI01000818
[OKVI] human gut metagenome; human gut
3772
3690
-
Tyr
GTA
[ENA]
¢þ
>WENV183511916
OMJG01013397
[OMJG] food metagenome; Cotija cheese
373
456
+
Tyr
GTA
[ENA]
¢þ
>WENV183790459
PPYF01411407
[PPYF] human gut metagenome; stool from patient with Crohn's disease
9889
9807
-
Tyr
GTA
[ENA]
¢þ
>WENV170593178
FUFK010851740
[FUFK] metagenome; unknown
113877
113961
+
Tyr
GTA
[ENA]
¢þ
>C181083154
CP023510
Actinomycetota
Rothia mucilaginosa FDAARGOS_369 [CP023510]
1759264
1759346
+
Tyr
GTA
-
¡û
>C191134144
CP035037
Actinomycetota
Leucobacter muris DSM 101948 [CP035037]
147714
147798
+
Tyr
GTA
-
¡û
>C191146784
CP035806
Actinomycetota
Leucobacter triazinivorans JW-1 [CP035806]
1790916
1790832
-
Tyr
GTA
-
¡û
>C191210043
LR134387
Actinomycetota
Cellulomonas fimi NCTC7547 [LR134387]
1068844
1068926
+
Tyr
GTA
-
¡û
>W1910374127
FUIA01000016
Actinomycetota
Frigoribacterium sp. JB110 [FUIA]
369110
369193
+
Tyr
GTA
[ENA]
¡û
>W1910782948
MPIM01000029
Actinomycetota
Leucobacter sp. OLCALW19 [MPIM]
189948
189864
-
Tyr
GTA
[ENA]
¡û
>W1910792237
MRAQ01000071
Actinomycetota
Leucobacter sp. OLTLW20 [MRAQ]
275121
275205
+
Tyr
GTA
[ENA]
¡û
>W1910792259
MRAR01000002
Actinomycetota
Leucobacter sp. OLAS13 [MRAR]
62076
61992
-
Tyr
GTA
[ENA]
¡û
>W1910792312
MRAS01000010
Actinomycetota
Leucobacter sp. OLCS4 [MRAS]
15913
15829
-
Tyr
GTA
[ENA]
¡û
>W1910792350
MRAT01000001
Actinomycetota
Leucobacter sp. OLDS2 [MRAT]
275236
275320
+
Tyr
GTA
[ENA]
¡û
>W1910792396
MRAU01000011
Actinomycetota
Leucobacter sp. OLES1 [MRAU]
10135
10051
-
Tyr
GTA
[ENA]
¡û
>W1910792451
MRAV01000011
Actinomycetota
Leucobacter sp. OLIS6 [MRAV]
275239
275323
+
Tyr
GTA
[ENA]
¡û
>W1910792501
MRAW01000024
Actinomycetota
Leucobacter sp. OLJS4 [MRAW]
31006
31090
+
Tyr
GTA
[ENA]
¡û
>W1910804075
MTCJ01000068
Actinomycetota
Leucobacter sp. OAMLP11 [MTCJ]
59727
59643
-
Tyr
GTA
[ENA]
¡û
>W1910804125
MTCK01000104
Actinomycetota
Leucobacter sp. OAMSW11 [MTCK]
275191
275275
+
Tyr
GTA
[ENA]
¡û
>W1910831742
MWZD01000012
Actinomycetota
Leucobacter massiliensis 122RC15 [MWZD]
153833
153915
+
Tyr
GTA
[ENA]
¡û
>W1911200150
NREM01000015
Actinomycetota
Mycobacteroides abscessus subsp. abscessus A229 [NREM]
132499
132416
-
Tyr
GTA
[ENA]
¡û
>W1911752196
QWLD01000046
Actinomycetota
Nesterenkonia muleiensis RB2 [QWLD]
30556
30473
-
Tyr
GTA
[ENA]
¡û
>W1911810694
QYZP01000002
Actinomycetota
Nesterenkonia natronophila M8 [QYZP]
140280
140362
+
Tyr
GTA
[ENA]
¡û
>W1810196782
PNEZ01000005
Actinomycetota
Microbacterium halophytorum YZYP518 [PNEZ]
159206
159289
+
Tyr
GTA
[ENA]
¡û
>W1810196840
PNFA01000005
Actinomycetota
Microbacterium halophytorum YJYP303 [PNFA]
199400
199317
-
Tyr
GTA
[ENA]
¡û
>W1810514181
QBUG01000002
Actinomycetota
Promicromonospora sp. AC04 [QBUG]
545897
545814
-
Tyr
GTA
[ENA]
¡û
>W1810757095
QPGM01000012
Actinomycetota
Microbacterium sp. JB110 [QPGM]
34300
34217
-
Tyr
GTA
[ENA]
¡û
>W1810912284
QVLP01000006
Actinomycetota
Microbacterium halotolerans YIM 70130 [QVLP]
451231
451315
+
Tyr
GTA
[ENA]
¡û
>W1810917652
QWBV01000006
Actinomycetota
Leucobacter sp. wl10 [QWBV]
110975
110892
-
Tyr
GTA
[ENA]
¡û
>C11105014
CP002666
Actinomycetota
Cellulomonas fimi ATCC 484 [CP002666]
1068840
1068922
+
Tyr
GTA
[Ensembl]
¡û
>C11105111
CP002665
Actinomycetota
Cellulomonas gilvus ATCC 13127 [CP002665]
852413
852495
+
Tyr
GTA
[Ensembl]
¡û
>W1511008746
JHBW01000088
Actinomycetota
Leucobacter musarum CBX152 [JHBW]
138655
138739
+
Tyr
GTA
[ENA]
¡û
>W1511008777
JHBX01000109
Actinomycetota
Leucobacter japonicus CBX130 [JHBX]
99948
100032
+
Tyr
GTA
[ENA]
¡û
>W1511013944
JHEI01000134
Actinomycetota
Leucobacter celer CBX151 [JHEI]
71596
71514
-
Tyr
GTA
[ENA]
¡û
>W1511585424
LAYO01000086
Actinomycetota
Leucobacter sp. Ag1 [LAYO]
34934
35018
+
Tyr
GTA
[ENA]
¡û
>W11178071
AGCW01000062
Actinomycetota
Leucobacter chromiiresistens JG 31 [AGCW]
754
670
-
Tyr
GTA
[ENA]
¡û
>W1610051856
BBHK01000244
Actinomycetota
Cellulomonas denverensis JCM 14733 [BBHK]
728
813
+
Tyr
GTA
[ENA]
¡û
>W1610590393
LDRK01000056
Actinomycetota
Leucobacter chromiiresistens [LDRK]
26245
26329
+
Tyr
GTA
[ENA]
¡û
>W1710048234
BBHK01000244
Actinomycetota
Cellulomonas denverensis JCM 14733 [BBHK]
728
813
+
Tyr
GTA
[ENA]
¡û
>W1710526110
FNKB01000001
Actinomycetota
Leucobacter chromiiresistens [FNKB]
786390
786474
+
Tyr
GTA
[ENA]
¡û
>W1710709673
LDRK01000056
Actinomycetota
Leucobacter chromiiresistens [LDRK]
26245
26329
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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