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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.119729 (109 seq.)
>C013006
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
4897059
4896975
-
Leu
TAG
[Ensembl]
¡û
>C015856
CP000388
Gammaproteobacteria
Paraglaciecola sp. T6c [CP000388]
3120190
3120274
+
Leu
TAG
[Ensembl]
¡û
>w013292
AANE01000009
Gammaproteobacteria
Marinomonas sp. MED121 [AANE]
166319
166405
+
Leu
TAG
[ENA]
¡û
>w013291
AANE01000009
Gammaproteobacteria
Marinomonas sp. MED121 [AANE]
165751
165837
+
Leu
TAG
[ENA]
¡û
>WENV180042165
LNFX01001456
[LNFX] marine sediment metagenome; antarctic beach sand mud
6344
6430
+
Leu
TAG
[ENA]
¡û
>WENV180638652
OCRI01005160
[OCRI] marine metagenome; Sterile flask
1400
1316
-
Leu
TAG
[ENA]
¡û
>W141223704
BAEK01000020
Gammaproteobacteria
Paraglaciecola agarilytica NO2 [BAEK]
174888
174972
+
Leu
TAG
[ENA]
¡û
>W141223891
BAEP01000003
Gammaproteobacteria
Paraglaciecola mesophila KMM 241 [BAEP]
33701
33617
-
Leu
TAG
[ENA]
¡û
>W141224057
BAES01000040
Gammaproteobacteria
Paraglaciecola psychrophila 170 [BAES]
22454
22538
+
Leu
TAG
[ENA]
¡û
>W141224064
BAES01000049
Gammaproteobacteria
Paraglaciecola psychrophila 170 [BAES]
16288
16372
+
Leu
TAG
[ENA]
¡û
>WENV182551698
OJCG01002860
[OJCG] seawater metagenome; Sea water
360
444
+
Leu
TAG
[ENA]
¡û
>WENV182556004
OJDF01001057
[OJDF] seawater metagenome; Sea water
1861
1777
-
Leu
TAG
[ENA]
¡û
>WENV182556771
OJDH01000061
[OJDH] seawater metagenome; Sea water
7215
7131
-
Leu
TAG
[ENA]
¡û
>WENV182575567
OJFV01000085
[OJFV] seawater metagenome; Sea water
49101
49017
-
Leu
TAG
[ENA]
¡û
>W141284669
JAMB01000001
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
14735
14651
-
Leu
TAG
[ENA]
¡û
>WENV183614646
OODW01009614
[OODW] marine metagenome; sea ice
168
252
+
Leu
TAG
[ENA]
¡û
>WENV183614978
OOEA01022885
[OOEA] marine metagenome; sea ice
500
584
+
Leu
TAG
[ENA]
¡û
>WENV183616775
OOEE01000843
[OOEE] marine metagenome; sea ice
202
286
+
Leu
TAG
[ENA]
¡û
>WENV183616788
OOEE01001070
[OOEE] marine metagenome; sea ice
85
1
-
Leu
TAG
[ENA]
¡û
>WENV183621389
OOFU01000103
[OOFU] marine metagenome; sea ice
11142
11058
-
Leu
TAG
[ENA]
¡û
>WENV183622618
OOFW01000151
[OOFW] marine metagenome; sea ice
10184
10268
+
Leu
TAG
[ENA]
¡û
>WENV183622635
OOFW01000513
[OOFW] marine metagenome; sea ice
3426
3510
+
Leu
TAG
[ENA]
¡û
>WENV183623179
OOFX01025457
[OOFX] marine metagenome; sea ice
378
294
-
Leu
TAG
[ENA]
¡û
>WENV183623581
OOGA01013112
[OOGA] marine metagenome; sea ice
767
683
-
Leu
TAG
[ENA]
¡û
>WENV183624803
OOGE01011416
[OOGE] marine metagenome; sea ice
553
637
+
Leu
TAG
[ENA]
¡û
>WENV183628300
OOGN01006727
[OOGN] marine metagenome; sea ice
647
563
-
Leu
TAG
[ENA]
¡û
>WENV183630757
OOGU01001606
[OOGU] marine metagenome; sea ice
2433
2349
-
Leu
TAG
[ENA]
¡û
>WENV170213608
CEPX01040287
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3199
3115
-
Leu
TAG
[ENA]
¡û
>WENV170214387
CEPX01082838
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
226
142
-
Leu
TAG
[ENA]
¡û
>WENV170780556
MAAB01005971
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1406
1322
-
Leu
TAG
[ENA]
¡û
>C191039805
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3783146
3783062
-
Leu
TAG
-
¡û
>W09106455
AAVH01000009
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
183062
183146
+
Leu
TAG
[ENA]
¡û
>W1911584679
PIPI01000001
Gammaproteobacteria
Aliidiomarina haloalkalitolerans AK5 [PIPI]
844122
844206
+
Leu
TAG
[ENA]
¡û
>W1810606230
QGOK01000007
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
219647
219731
+
Leu
TAG
[ENA]
¡û
>W1810720322
QNRF01000001
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
697234
697318
+
Leu
TAG
[ENA]
¡û
>W2010584372
JABAEK010000004
Gammaproteobacteria
Marinomonas sp. M1K-6 [JABAEK]
281864
281948
+
Leu
TAG
[ENA]
¡û
>W2010967724
NHTT01000004
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
311133
311217
+
Leu
TAG
[ENA]
¡û
>W2011194072
PIPI01000001
Gammaproteobacteria
Aliidiomarina haloalkalitolerans AK5 [PIPI]
844122
844206
+
Leu
TAG
[ENA]
¡û
>W2011431085
RIZH01000001
Gammaproteobacteria
Marinomonas rhizomae IVIA-Po-145 [RIZH]
356247
356331
+
Leu
TAG
[ENA]
¡û
>W2011648767
SNXC01000009
Gammaproteobacteria
Marinomonas balearica CECT 7378 [SNXC]
116906
116990
+
Leu
TAG
[ENA]
¡û
>W2011648803
SNXC01000012
Gammaproteobacteria
Marinomonas balearica CECT 7378 [SNXC]
466141
466225
+
Leu
TAG
[ENA]
¡û
>W2011651367
SNZA01000001
Gammaproteobacteria
Marinomonas communis DSM 5604 [SNZA]
1295560
1295476
-
Leu
TAG
[ENA]
¡û
>W2011651368
SNZA01000001
Gammaproteobacteria
Marinomonas communis DSM 5604 [SNZA]
1295331
1295247
-
Leu
TAG
[ENA]
¡û
>W2011651387
SNZA01000002
Gammaproteobacteria
Marinomonas communis DSM 5604 [SNZA]
559711
559795
+
Leu
TAG
[ENA]
¡û
>W2012023251
VFRR01000008
Gammaproteobacteria
Marinomonas sp. HB171799 [VFRR]
10489
10405
-
Leu
TAG
[ENA]
¡û
>W2012023287
VFRR01000039
Gammaproteobacteria
Marinomonas sp. HB171799 [VFRR]
29074
29158
+
Leu
TAG
[ENA]
¡û
>W2012132107
VSRV01000001
Gammaproteobacteria
Marinomonas sp. IMCC 4694 [VSRV]
3357591
3357507
-
Leu
TAG
[ENA]
¡û
>W2012435550
WTPY01000029
Gammaproteobacteria
Paraglaciecola sp. 20A4 [WTPY]
22244
22160
-
Leu
TAG
[ENA]
¡û
>W2110030186
BMLJ01000002
Gammaproteobacteria
Marinomonas arctica CGMCC 1.6498 [BMLJ]
374611
374695
+
Leu
TAG
[ENA]
¡û
>W2110050065
BMZC01000010
Gammaproteobacteria
Paraglaciecola oceanifecundans KCTC 32337 [BMZC]
35507
35423
-
Leu
TAG
[ENA]
¡û
>W2110416208
JAEILT010000075
Gammaproteobacteria
Paraglaciecola chathamensis IB30 [JAEILT]
142
58
-
Leu
TAG
[ENA]
¡û
>W2110612789
JAHKQP010000036
Gammaproteobacteria
Paraglaciecola agarilytica A3R12 [JAHKQP]
152025
152109
+
Leu
TAG
[ENA]
¡û
>C211273590
CP070273
Gammaproteobacteria
Marinomonas foliarum JZW [CP070273]
1827790
1827706
-
Leu
TAG
-
¡û
>C231056808
CP047694
Gammaproteobacteria
Marinomonas mediterranea MMB-3 (CPR1) [CP047694]
1467551
1467635
+
Leu
TAG
-
¡û
>C231056835
CP047694
Gammaproteobacteria
Marinomonas mediterranea MMB-3 (CPR1) [CP047694]
4441950
4441866
-
Leu
TAG
-
¡û
>C231056980
CP047696
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP047696]
1472460
1472544
+
Leu
TAG
-
¡û
>C231057007
CP047696
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP047696]
4461088
4461004
-
Leu
TAG
-
¡û
>C231129742
CP073013
Gammaproteobacteria
Marinomonas profundi M1K-6 [CP073013]
1544007
1543923
-
Leu
TAG
-
¡û
>C241010759
AP027271
Gammaproteobacteria
Marinomonas pontica 200518_36 [AP027271]
3354881
3354797
-
Leu
TAG
-
¡û
>C241114763
CP047024
Gammaproteobacteria
Paraglaciecola sp. L1A13 [CP047024]
2972910
2972994
+
Leu
TAG
-
¡û
>C241122475
CP047656
Gammaproteobacteria
Paraglaciecola mesophila GPM4 [CP047656]
10380
10296
-
Leu
TAG
-
¡û
>C11109483
CP002526
Gammaproteobacteria
Glaciecola sp. 4H-3-7+YE-5 4H-3-7+YE-5 [CP002526]
1987254
1987170
-
Leu
TAG
[Ensembl]
¡û
>W1510741306
CYHG01000001
Gammaproteobacteria
Marinomonas fungiae JCM 18476 [CYHG]
476026
475942
-
Leu
TAG
[ENA]
¡û
>W1510741307
CYHG01000001
Gammaproteobacteria
Marinomonas fungiae JCM 18476 [CYHG]
475801
475717
-
Leu
TAG
[ENA]
¡û
>W1510741308
CYHG01000001
Gammaproteobacteria
Marinomonas fungiae JCM 18476 [CYHG]
475564
475480
-
Leu
TAG
[ENA]
¡û
>W1510741354
CYHG01000015
Gammaproteobacteria
Marinomonas fungiae JCM 18476 [CYHG]
68014
68098
+
Leu
TAG
[ENA]
¡û
>W1511348371
JRKG01000050
Gammaproteobacteria
Pseudoalteromonas sp. PLSV [JRKG]
146381
146297
-
Leu
TAG
[ENA]
¡û
>W1511518500
JXYC01000004
Gammaproteobacteria
Marinomonas sp. S3726 [JXYC]
6901
6817
-
Leu
TAG
[ENA]
¡û
>W1511518501
JXYC01000004
Gammaproteobacteria
Marinomonas sp. S3726 [JXYC]
6490
6406
-
Leu
TAG
[ENA]
¡û
>C131007655
CP003837
Gammaproteobacteria
Paraglaciecola psychrophila 170 [CP003837]
3119770
3119854
+
Leu
TAG
-
¡û
>C131007687
CP003837
Gammaproteobacteria
Paraglaciecola psychrophila 170 [CP003837]
3660832
3660748
-
Leu
TAG
-
¡û
>W1610503671
FLOB01000001
Gammaproteobacteria
Marinomonas spartinae [FLOB]
12590
12506
-
Leu
TAG
[ENA]
¡û
>W1610503757
FLOC01000002
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
268679
268595
-
Leu
TAG
[ENA]
¡û
>W1610503758
FLOC01000002
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
268455
268371
-
Leu
TAG
[ENA]
¡û
>W1610503759
FLOC01000002
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
268217
268133
-
Leu
TAG
[ENA]
¡û
>W1610503849
FLOC01000028
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
11260
11176
-
Leu
TAG
[ENA]
¡û
>W1610506633
FLRA01000010
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
15369
15285
-
Leu
TAG
[ENA]
¡û
>W1610506634
FLRA01000011
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
196048
195964
-
Leu
TAG
[ENA]
¡û
>W1610506635
FLRA01000011
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
195800
195716
-
Leu
TAG
[ENA]
¡û
>W1610540068
JSEE01000018
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
68115
68199
+
Leu
TAG
[ENA]
¡û
>W1610540127
JSEN01000010
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
207161
207245
+
Leu
TAG
[ENA]
¡û
>W1610540128
JSEN01000010
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
207570
207654
+
Leu
TAG
[ENA]
¡û
>W1610540220
JSEO01000009
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
207161
207245
+
Leu
TAG
[ENA]
¡û
>W1610540221
JSEO01000009
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
207570
207654
+
Leu
TAG
[ENA]
¡û
>W1610632871
LIQF01000001
Gammaproteobacteria
Marinomonas fungiae [LIQF]
476026
475942
-
Leu
TAG
[ENA]
¡û
>W1610632872
LIQF01000001
Gammaproteobacteria
Marinomonas fungiae [LIQF]
475801
475717
-
Leu
TAG
[ENA]
¡û
>W1610632873
LIQF01000001
Gammaproteobacteria
Marinomonas fungiae [LIQF]
475564
475480
-
Leu
TAG
[ENA]
¡û
>W1610632919
LIQF01000015
Gammaproteobacteria
Marinomonas fungiae [LIQF]
68014
68098
+
Leu
TAG
[ENA]
¡û
>W1610924790
LTAV01000002
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
231
315
+
Leu
TAG
[ENA]
¡û
>W1610924795
LTAV01000003
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
201497
201581
+
Leu
TAG
[ENA]
¡û
>W1610924824
LTAV01000019
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
299
215
-
Leu
TAG
[ENA]
¡û
>W1610924873
LTAW01000003
Gammaproteobacteria
Marinomonas atlantica [LTAW]
77702
77786
+
Leu
TAG
[ENA]
¡û
>W1610924874
LTAW01000003
Gammaproteobacteria
Marinomonas atlantica [LTAW]
77951
78035
+
Leu
TAG
[ENA]
¡û
>W1610924907
LTAW01000009
Gammaproteobacteria
Marinomonas atlantica [LTAW]
15231
15147
-
Leu
TAG
[ENA]
¡û
>W1610924943
LTAX01000001
Gammaproteobacteria
Marinomonas gallaica [LTAX]
379803
379719
-
Leu
TAG
[ENA]
¡û
>W1610924944
LTAX01000001
Gammaproteobacteria
Marinomonas gallaica [LTAX]
379555
379471
-
Leu
TAG
[ENA]
¡û
>W1610924979
LTAX01000018
Gammaproteobacteria
Marinomonas gallaica [LTAX]
59167
59251
+
Leu
TAG
[ENA]
¡û
>W1710496500
FLOB01000001
Gammaproteobacteria
Marinomonas spartinae [FLOB]
12590
12506
-
Leu
TAG
[ENA]
¡û
>W1710496586
FLOC01000002
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
268679
268595
-
Leu
TAG
[ENA]
¡û
>W1710496587
FLOC01000002
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
268455
268371
-
Leu
TAG
[ENA]
¡û
>W1710496588
FLOC01000002
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
268217
268133
-
Leu
TAG
[ENA]
¡û
>W1710496678
FLOC01000028
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
11260
11176
-
Leu
TAG
[ENA]
¡û
>W1710541367
FNYH01000001
Gammaproteobacteria
Allopseudospirillum japonicum [FNYH]
370343
370259
-
Leu
TAG
[ENA]
¡û
>W1710583957
FQVF01000007
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
248757
248841
+
Leu
TAG
[ENA]
¡û
>W1710643089
JSEE01000018
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
68115
68199
+
Leu
TAG
[ENA]
¡û
>W1710643148
JSEN01000010
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
207161
207245
+
Leu
TAG
[ENA]
¡û
>W1710643149
JSEN01000010
Gammaproteobacteria
Marinomonas sp. SBI22 [JSEN]
207570
207654
+
Leu
TAG
[ENA]
¡û
>W1710643241
JSEO01000009
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
207161
207245
+
Leu
TAG
[ENA]
¡û
>W1710643242
JSEO01000009
Gammaproteobacteria
Marinomonas sp. SBI8L [JSEO]
207570
207654
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK