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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.120153 (23 seq.)
>W1710875563
LMOM01000024
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
8874
8792
-
Leu
GAG
[ENA]
¡û
>W131104585
APCS01000068
Deinococcota
Deinococcus wulumuqiensis R12 [APCS]
17467
17549
+
Leu
GAG
[ENA]
¡û
>W131213878
ATTJ01000001
Deinococcota
Deinococcus ficus 2009 [ATTJ]
1379465
1379547
+
Leu
GAG
[ENA]
¡û
>C007972
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
339324
339242
-
Leu
GAG
[Ensembl]
¡û
>WENV180231909
OBCO01000030
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
356699
356781
+
Leu
GAG
[ENA]
¢þ
>WENV180232918
OBCP01000031
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
356699
356781
+
Leu
GAG
[ENA]
¢þ
>WENV180569770
OCLR01000445
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
10077
10159
+
Leu
GAG
[ENA]
¢þ
>WENV180570727
OCLS01000450
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
10082
10164
+
Leu
GAG
[ENA]
¢þ
>WENV180571278
OCLT01000033
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
356699
356781
+
Leu
GAG
[ENA]
¢þ
>WENV180573517
OCLW01000032
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
356699
356781
+
Leu
GAG
[ENA]
¢þ
>WENV180639590
OCRL01000035
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
356699
356781
+
Leu
GAG
[ENA]
¢þ
>WENV180640518
OCRM01000033
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
356699
356781
+
Leu
GAG
[ENA]
¢þ
>W141154770
AXLL01000047
Deinococcota
Deinococcus wulumuqiensis R13 [AXLL]
17445
17527
+
Leu
GAG
[ENA]
¡û
>C181196468
CP031158
Deinococcota
Deinococcus wulumuqiensis NEB 479 [CP031158]
2557731
2557649
-
Leu
GAG
-
¡û
>C191018452
CP021081
Deinococcota
Deinococcus ficus CC-FR2-10 [CP021081]
2614940
2614858
-
Leu
GAG
-
¡û
>W141561445
JHYL01000001
Deinococcota
Deinococcus radiodurans ATCC 13939 [JHYL]
356991
357073
+
Leu
GAG
[ENA]
¡û
>W141702048
JMLF01000001
Deinococcota
Deinococcus radiodurans DSM 20539 [JMLF]
356876
356958
+
Leu
GAG
[ENA]
¡û
>C09103880
CP001114
Deinococcota
Deinococcus deserti VCD115 [CP001114]
130443
130525
+
Leu
GAG
[Ensembl]
¡û
>C10105374
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
339324
339242
-
Leu
GAG
[Ensembl]
¡û
>C11107301
AE000513
Deinococcota
Deinococcus radiodurans R1 [AE000513, AE001825]
339324
339242
-
Leu
GAG
[Ensembl]
¡û
>C161082976
CP015081
Deinococcota
Deinococcus radiodurans R1 [CP015081, CP015082]
2386276
2386358
+
Leu
GAG
-
¡û
>W1610737909
LMOM01000024
Deinococcota
Deinococcus sp. Leaf326 [LMOM]
8874
8792
-
Leu
GAG
[ENA]
¡û
>W1710542275
FNZA01000016
Deinococcota
Deinococcus reticulitermitis [FNZA]
54079
53997
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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