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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.120346 (27 seq.)
>W1711010115
LQRA01000109
Bacillota
Paenibacillus elgii [LQRA]
25940
25858
-
Leu
TAG
[ENA]
¡û
>W1711252479
LYPA01000062
Bacillota
Paenibacillus oryzae [LYPA]
7022
6940
-
Leu
TAG
[ENA]
¡û
>WENV183726800
PJTO01000186
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
60820
60738
-
Leu
TAG
[ENA]
¢þ
>W1910154625
BILX01000005
Bacillota
Paenibacillus ehimensis NBRC 15659 [BILX]
211255
211173
-
Leu
TAG
[ENA]
¡û
>W1910175787
BJCS01000032
Bacillota
Paenibacillus naphthalenovorans 4B1 [BJCS]
5019
4940
-
Leu
TAG
[ENA]
¡û
>C09108234
CP001656
Bacillota
Paenibacillus sp. JDR-2 [CP001656]
6471757
6471675
-
Leu
TAG
[Ensembl]
¡û
>W1911779699
QXQA01000029
Bacillota
Paenibacillus nanensis DSM 22867 [QXQA]
27719
27637
-
Leu
TAG
[ENA]
¡û
>W1911779700
QXQA01000029
Bacillota
Paenibacillus nanensis DSM 22867 [QXQA]
23675
23596
-
Leu
TAG
[ENA]
¡û
>W1810679729
QKRB01000036
Bacillota
Paenibacillus sambharensis SMB1 [QKRB]
285986
285904
-
Leu
TAG
[ENA]
¡û
>W1810697183
QLUW01000003
Bacillota
Paenibacillus montanisoli RA17 [QLUW]
1002
1084
+
Leu
TAG
[ENA]
¡û
>W1810697210
QLUW01000006
Bacillota
Paenibacillus montanisoli RA17 [QLUW]
684
766
+
Leu
TAG
[ENA]
¡û
>W1810697219
QLUW01000010
Bacillota
Paenibacillus montanisoli RA17 [QLUW]
30988
30906
-
Leu
TAG
[ENA]
¡û
>W1810787766
QRDY01000025
Bacillota
Cohnella lupini CECT 8236 [QRDY]
809
891
+
Leu
TAG
[ENA]
¡û
>C151075907
CP011058
Bacillota
Paenibacillus beijingensis DSM 24997 [CP011058]
2819660
2819739
+
Leu
TAG
[Ensembl]
¡û
>W1511499698
JXAK01000083
Bacillota
Paenibacillus sp. VKM B-2647 [JXAK]
21883
21801
-
Leu
TAG
[ENA]
¡û
>C121013047
CP003422
Bacillota
Paenibacillus mucilaginosus K02 [CP003422]
8299894
8299812
-
Leu
TAG
[Ensembl]
¡û
>C161058237
CP013652
Bacillota
Paenibacillus naphthalenovorans 32O-Y [CP013652]
4608402
4608481
+
Leu
TAG
[Ensembl]
¡û
>C161058314
CP013653
Bacillota
Paenibacillus sp. 32O-W [CP013653]
842599
842678
+
Leu
TAG
[Ensembl]
¡û
>W1610543216
JTHN01000163
Bacillota
Paenibacillus sp. A3 [JTHN]
13351
13269
-
Leu
TAG
[ENA]
¡û
>W1610858635
LQRA01000109
Bacillota
Paenibacillus elgii [LQRA]
25940
25858
-
Leu
TAG
[ENA]
¡û
>W1611017267
LYPA01000062
Bacillota
Paenibacillus oryzae [LYPA]
7022
6940
-
Leu
TAG
[ENA]
¡û
>W1710505565
FMTT01000060
Bacillota
Paenibacillus tianmuensis [FMTT]
29624
29542
-
Leu
TAG
[ENA]
¡û
>W1710546688
FOCJ01000007
Bacillota
Paenibacillus sp. OV219 [FOCJ]
1563
1645
+
Leu
TAG
[ENA]
¡û
>W1710546701
FOCJ01000008
Bacillota
Paenibacillus sp. OV219 [FOCJ]
963
1045
+
Leu
TAG
[ENA]
¡û
>W1710546711
FOCJ01000010
Bacillota
Paenibacillus sp. OV219 [FOCJ]
718
801
+
Leu
TAG
[ENA]
¡û
>W1710567962
FOTE01000017
Bacillota
Paenibacillus sp. 1_12 [FOTE]
712
794
+
Leu
TAG
[ENA]
¡û
>W1710646347
JTHN01000163
Bacillota
Paenibacillus sp. A3 [JTHN]
13351
13269
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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