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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.120470 (44 seq.)
>WENV180004409
FLRS01001962
[FLRS] metagenome; saliva
110
194
+
Leu
TAG
[ENA]
¡û
>WENV180008149
FLSB01003821
[FLSB] metagenome; saliva
375
291
-
Leu
TAG
[ENA]
¡û
>WENV180011588
FLSK01006406
[FLSK] metagenome; saliva
1020
936
-
Leu
TAG
[ENA]
¡û
>WENV180011983
FLSK01119942
[FLSK] metagenome; saliva
1117
1033
-
Leu
TAG
[ENA]
¡û
>WENV180116810
OAQX01008756
[OAQX] human gut metagenome; ENVO:feces
139
55
-
Leu
TAG
[ENA]
¡û
>WENV180225768
OBBP01000002
[OBBP] human oral metagenome; human oral
10967
10883
-
Leu
TAG
[ENA]
¡û
>WENV180551349
OCJF01012524
[OCJF] human oral metagenome; human oral
17
101
+
Leu
TAG
[ENA]
¡û
>WENV180731660
ODGW01005154
[ODGW] human metagenome; G_DNA_Supragingival plaque
386
470
+
Leu
TAG
[ENA]
¡û
>WENV180759413
ODHY01010516
[ODHY] human metagenome; G_DNA_Buccal mucosa
1142
1058
-
Leu
TAG
[ENA]
¡û
>WENV180782711
ODIQ01000128
[ODIQ] human metagenome; G_DNA_Tongue dorsum
62372
62456
+
Leu
TAG
[ENA]
¡û
>WENV180794619
ODIZ01002294
[ODIZ] human metagenome; G_DNA_Tongue dorsum
5210
5126
-
Leu
TAG
[ENA]
¡û
>WENV180794665
ODIZ01003342
[ODIZ] human metagenome; G_DNA_Tongue dorsum
4041
4125
+
Leu
TAG
[ENA]
¡û
>WENV180804704
ODJG01009884
[ODJG] human metagenome; G_DNA_Supragingival plaque
2268
2184
-
Leu
TAG
[ENA]
¡û
>WENV180807542
ODJI01003700
[ODJI] human metagenome; G_DNA_Tongue dorsum
1854
1770
-
Leu
TAG
[ENA]
¡û
>WENV180824082
ODJX01000605
[ODJX] human metagenome; G_DNA_Supragingival plaque
159
75
-
Leu
TAG
[ENA]
¡û
>WENV180845994
ODKT01003702
[ODKT] human metagenome; G_DNA_Supragingival plaque
6904
6988
+
Leu
TAG
[ENA]
¡û
>WENV180853732
ODKX01000036
[ODKX] human metagenome; G_DNA_Tongue dorsum
12141
12057
-
Leu
TAG
[ENA]
¡û
>WENV180857724
ODLC01000014
[ODLC] human metagenome; G_DNA_Tongue dorsum
42842
42926
+
Leu
TAG
[ENA]
¡û
>WENV180865395
ODLJ01000021
[ODLJ] human metagenome; G_DNA_Tongue dorsum
100722
100638
-
Leu
TAG
[ENA]
¡û
>WENV180877909
ODLV01005483
[ODLV] human metagenome; G_DNA_Tongue dorsum
706
790
+
Leu
TAG
[ENA]
¡û
>WENV180923935
ODTK01000414
[ODTK] human metagenome; G_DNA_Supragingival plaque
12808
12724
-
Leu
TAG
[ENA]
¡û
>WENV180929006
ODTN01000299
[ODTN] human metagenome; G_DNA_Tongue dorsum
6505
6589
+
Leu
TAG
[ENA]
¡û
>WENV180938089
ODTX01000587
[ODTX] human metagenome; G_DNA_Supragingival plaque
3310
3226
-
Leu
TAG
[ENA]
¡û
>WENV180954325
ODUJ01001647
[ODUJ] human metagenome; G_DNA_Tongue dorsum
3308
3392
+
Leu
TAG
[ENA]
¡û
>WENV180977115
ODUZ01000008
[ODUZ] human metagenome; G_DNA_Tongue dorsum
148346
148262
-
Leu
TAG
[ENA]
¡û
>WENV181011331
ODWI01020246
[ODWI] human metagenome; G_DNA_Tongue dorsum
949
1033
+
Leu
TAG
[ENA]
¡û
>WENV181063208
ODYP01000217
[ODYP] human metagenome; G_DNA_Supragingival plaque
6165
6249
+
Leu
TAG
[ENA]
¡û
>WENV181063751
ODYP01003050
[ODYP] human metagenome; G_DNA_Supragingival plaque
5969
6053
+
Leu
TAG
[ENA]
¡û
>WENV181169776
OEIV010009807
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
713
629
-
Leu
TAG
[ENA]
¡û
>WENV181178612
OEJT01000090
[OEJT] human metagenome; G_DNA_Supragingival plaque
22676
22760
+
Leu
TAG
[ENA]
¡û
>WENV182165087
OHMN01025072
[OHMN] human gut metagenome; faeces
181
97
-
Leu
TAG
[ENA]
¡û
>WENV182891742
OKSH01003503
[OKSH] human gut metagenome; faeces
1604
1520
-
Leu
TAG
[ENA]
¡û
>WENV170476817
CEVI01217848
[CEVI] marine metagenome genome assembly TARA_142_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1003
1087
+
Leu
TAG
[ENA]
¡û
>W2010362332
CADDWL010000087
Unclassified
Candidatus Saccharibacteria bacterium [CADDWL]
8867
8951
+
Leu
TAG
[ENA]
¡û
>W2011219629
PRLO01000001
Unclassified
Candidatus Saccharibacteria bacterium TM7_ EAM_G5_1_HOT_356 [PRLO]
74302
74218
-
Leu
TAG
[ENA]
¡û
>W2011551563
SDRL01000028
Unclassified
TM7 phylum sp. oral taxon 353 TM7_HOT_353-SAG1 [SDRL]
7839
7755
-
Leu
TAG
[ENA]
¡û
>W2011551684
SDRP01000026
Unclassified
TM7 phylum sp. oral taxon 352 TM7_HOT_352-SAG4 [SDRP]
4605
4521
-
Leu
TAG
[ENA]
¡û
>W2011551775
SDRS01000003
Unclassified
TM7 phylum sp. oral taxon 352 TM7_HOT_352-SAG1 [SDRS]
11551
11467
-
Leu
TAG
[ENA]
¡û
>W2011552069
SDSB01000005
Unclassified
TM7 phylum sp. oral taxon 352 TM7_HOT_352-SAG5 [SDSB]
16807
16723
-
Leu
TAG
[ENA]
¡û
>C201082663
CP039997
Unclassified
Candidatus Saccharibacteria bacterium oral taxon 488 CM010 [CP039997]
452649
452733
+
Leu
TAG
-
¡û
>C201082747
CP039999
Unclassified
Candidatus Saccharibacteria bacterium oral taxon 488 CM001 [CP039999]
461445
461529
+
Leu
TAG
-
¡û
>C201082832
CP040001
Unclassified
Candidatus Saccharibacteria bacterium oral taxon 488 CM006 [CP040001]
490030
490114
+
Leu
TAG
-
¡û
>C201082874
CP040002
Unclassified
Candidatus Saccharibacteria bacterium oral taxon 488 AC002 [CP040002]
454740
454824
+
Leu
TAG
-
¡û
>C201295053
CP058260
Unclassified
Candidatus Saccharibacteria bacterium oral taxon 488 HB001 [CP058260]
454713
454797
+
Leu
TAG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK