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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.121145 (105 seq.)
>W1710990950
LPXH01000034
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
170082
170166
+
Leu
GAG
[ENA]
¡û
>W1711385124
MEDS01000024
Betaproteobacteria
Comamonas sp. SCN 65-56 [MEDS]
22554
22470
-
Leu
GAG
[ENA]
¡û
>W1711904622
MZNW01000150
Betaproteobacteria
Comamonas thiooxydans [MZNW]
6054
5970
-
Leu
GAG
[ENA]
¡û
>C171098264
CP019697
Betaproteobacteria
Paenalcaligenes hominis 15S00501 [CP019697]
1068367
1068283
-
Leu
GAG
-
¡û
>C171103242
CP020046
Betaproteobacteria
Thiomonas intermedia ATCC 15466 [CP020046]
2547860
2547944
+
Leu
GAG
-
¡û
>W131171396
ARGE01000033
Betaproteobacteria
Brachymonas chironomi DSM 19884 [ARGE]
82360
82444
+
Leu
GAG
[ENA]
¡û
>W131180665
ARNH01000001
Betaproteobacteria
Bordetella sp. FB-8 [ARNH]
224163
224079
-
Leu
GAG
[ENA]
¡û
>W131224224
AUCQ01000005
Betaproteobacteria
Comamonas composti DSM 21721 [AUCQ]
235735
235651
-
Leu
GAG
[ENA]
¡û
>WENV180114280
OAPS01002566
[OAPS] marine metagenome; sea water
1069
1153
+
Leu
GAG
[ENA]
¡û
>WENV180209628
OBAL01008593
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
99
15
-
Leu
GAG
[ENA]
¡û
>WENV180283827
OBID01003835
[OBID] metagenome; sludge
1193
1277
+
Leu
GAG
[ENA]
¡û
>WENV180334952
OBLF01103767
[OBLF] metagenome; feces
335
251
-
Leu
GAG
[ENA]
¡û
>WENV181308174
OFIS01000430
[OFIS] sludge metagenome; sludge
20676
20592
-
Leu
GAG
[ENA]
¡û
>WENV181367450
OFQB01001878
[OFQB] freshwater metagenome; Freshwater Lake
935
851
-
Leu
GAG
[ENA]
¡û
>WENV181401378
OFTX01000068
[OFTX] sludge metagenome; sludge
57582
57498
-
Leu
GAG
[ENA]
¡û
>WENV181401568
OFTX01001016
[OFTX] sludge metagenome; sludge
5808
5892
+
Leu
GAG
[ENA]
¡û
>WENV181401636
OFTX01001954
[OFTX] sludge metagenome; sludge
3828
3912
+
Leu
GAG
[ENA]
¡û
>WENV181411007
OGCI01010407
[OGCI] hot springs metagenome; Hot spring water
1667
1583
-
Leu
GAG
[ENA]
¡û
>WENV181414192
OGCL01000088
[OGCL] hot springs metagenome; Hot spring water
84774
84858
+
Leu
GAG
[ENA]
¡û
>WENV181415375
OGCL01009377
[OGCL] hot springs metagenome; Hot spring water
2959
2875
-
Leu
GAG
[ENA]
¡û
>W141277148
JAEJ01000018
Betaproteobacteria
Bordetella petrii J49 [JAEJ]
19048
18964
-
Leu
GAG
[ENA]
¡û
>W141277445
JAEP01000003
Betaproteobacteria
Bordetella petrii J51 [JAEP]
198068
197984
-
Leu
GAG
[ENA]
¡û
>WENV183710166
PDWI01040915
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2386
2302
-
Leu
GAG
[ENA]
¡û
>WENV183740572
PJUF01003599
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
4135
4219
+
Leu
GAG
[ENA]
¡û
>WENV183741211
PJUF01057821
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
265
181
-
Leu
GAG
[ENA]
¡û
>WENV170019808
BBPE01000709
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
24338
24254
-
Leu
GAG
[ENA]
¡û
>WENV170652826
JRYH01038928
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
959
1043
+
Leu
GAG
[ENA]
¡û
>C181158468
CP027667
Betaproteobacteria
Melaminivora suipulveris SC2-9 [CP027667]
2835010
2835094
+
Leu
GAG
-
¡û
>C181159991
CP027792
Betaproteobacteria
Pulveribacter suum SC2-7 [CP027792]
2936840
2936756
-
Leu
GAG
-
¡û
>C181169423
CP028901
Betaproteobacteria
Orrella marina HZ20 [CP028901]
2326071
2325987
-
Leu
GAG
-
¡û
>C191007515
AP019373
Betaproteobacteria
Sulfuricystis thermophila M52 [AP019373]
1185285
1185369
+
Leu
GAG
-
¡û
>W141816802
JQKD01000023
Betaproteobacteria
Xenophilus azovorans DSM 13620 [JQKD]
32216
32132
-
Leu
GAG
[ENA]
¡û
>W1911701428
QNUI01000019
Betaproteobacteria
Comamonadaceae bacterium YIM 73032 [QNUI]
16926
17010
+
Leu
GAG
[ENA]
¡û
>W1911702176
QOAZ01000005
Betaproteobacteria
Comamonadaceae bacterium SYSU G00088 [QOAZ]
68896
68980
+
Leu
GAG
[ENA]
¡û
>SRA1000691
SRR001046.92295
Solar Salterns, microbial fraction from low salinity saltern in San Diego, CA (SRP000138)
103
19
-
Leu
GAG
[SRA]
>W1810062094
PDNV01000006
Betaproteobacteria
Pollutimonas nitritireducens JR1/69-2-13 [PDNV]
327727
327643
-
Leu
GAG
[ENA]
¡û
>W1810072658
PEFL01000002
Betaproteobacteria
Comamonas sp. 26 [PEFL]
155718
155634
-
Leu
GAG
[ENA]
¡û
>W1810273273
PSNX01000009
Betaproteobacteria
Caldimonas caldifontis BCRC 80649 [PSNX]
53807
53723
-
Leu
GAG
[ENA]
¡û
>C151101355
HG916765
Betaproteobacteria
Castellaniella defragrans 65Phen [HG916765]
2987380
2987296
-
Leu
GAG
[Ensembl]
¡û
>W2010107264
BKBW01000002
Betaproteobacteria
Comamonas testosteroni TA441 [BKBW]
154178
154094
-
Leu
GAG
[ENA]
¡û
>W2010364718
CADEPJ010000112
Betaproteobacteria
Comamonas jiangduensis [CADEPJ]
399
483
+
Leu
GAG
[ENA]
¡û
>W2010567254
JAATIZ010000001
Betaproteobacteria
Paenalcaligenes hominis DSM 26613 [JAATIZ]
10841
10925
+
Leu
GAG
[ENA]
¡û
>W2010673636
JACCEM010000004
Betaproteobacteria
Parapusillimonas granuli LMG 24012 [JACCEM]
11513
11429
-
Leu
GAG
[ENA]
¡û
>W2010673732
JACCEO010000008
Betaproteobacteria
Alcaligenaceae bacterium CGII-43 [JACCEO]
73485
73401
-
Leu
GAG
[ENA]
¡û
>W2010702639
JACHHM010000004
Betaproteobacteria
Parapusillimonas granuli DSM 18079 [JACHHM]
11481
11397
-
Leu
GAG
[ENA]
¡û
>W2011277968
QNUI01000019
Betaproteobacteria
Comamonadaceae bacterium YIM 73032 [QNUI]
16926
17010
+
Leu
GAG
[ENA]
¡û
>W2011278791
QOAZ01000005
Betaproteobacteria
Comamonadaceae bacterium SYSU G00088 [QOAZ]
68896
68980
+
Leu
GAG
[ENA]
¡û
>W2011505458
RYDV01000005
Betaproteobacteria
Candidimonas sp. SYP-B2681 [RYDV]
143361
143445
+
Leu
GAG
[ENA]
¡û
>W2011627263
SMAH01000001
Betaproteobacteria
Tepidimonas ignava DSM 12034 [SMAH]
130668
130752
+
Leu
GAG
[ENA]
¡û
>W2011861305
UOOB01000001
Betaproteobacteria
Comamonas sp. lk [UOOB]
1398641
1398725
+
Leu
GAG
[ENA]
¡û
>W2012062746
VJOL01000006
Betaproteobacteria
Tepidimonas thermarum AA-1 [VJOL]
56997
57081
+
Leu
GAG
[ENA]
¡û
>W2012062865
VJON01000019
Betaproteobacteria
Tepidimonas sp. SPSP-6 [VJON]
13353
13269
-
Leu
GAG
[ENA]
¡û
>W2012106892
VOQT01000004
Betaproteobacteria
Comamonas sp. Z1 [VOQT]
280649
280733
+
Leu
GAG
[ENA]
¡û
>W2012143332
VTRK01000001
Betaproteobacteria
Comamonas thiooxydans JC12 [VTRK]
685480
685564
+
Leu
GAG
[ENA]
¡û
>SRA1052245
SRR035098.166590
454 Sequencing (SRP001819)
61
145
+
Leu
GAG
[SRA]
>SRA1052587
SRR035098.232658
454 Sequencing (SRP001819)
61
145
+
Leu
GAG
[SRA]
>SRA1053326
SRR035098.382825
454 Sequencing (SRP001819)
418
502
+
Leu
GAG
[SRA]
>W2012428922
WSJA01000057
Betaproteobacteria
Bordetella sp. 15P40C-2 [WSJA]
139998
140082
+
Leu
GAG
[ENA]
¡û
>W2012428935
WSJB01000003
Betaproteobacteria
Bordetella sp. 02P26C-1 [WSJB]
47900
47816
-
Leu
GAG
[ENA]
¡û
>W2110019191
BMCQ01000002
Betaproteobacteria
Paenalcaligenes hominis CCM 7698 [BMCQ]
10851
10935
+
Leu
GAG
[ENA]
¡û
>W2110144832
JAANES010000003
Betaproteobacteria
Comamonas sp. PE63 [JAANES]
162261
162177
-
Leu
GAG
[ENA]
¡û
>W2110260489
JACSQK010000004
Betaproteobacteria
Comamonas sp. Sa2CVA6 [JACSQK]
257779
257695
-
Leu
GAG
[ENA]
¡û
>W2110280925
JACWIJ010000002
Betaproteobacteria
Melaminivora jejuensis KCTC 32230 [JACWIJ]
2001765
2001681
-
Leu
GAG
[ENA]
¡û
>W2110414863
JAEIJE010000002
Betaproteobacteria
Comamonas sp. NyZ500 [JAEIJE]
264251
264335
+
Leu
GAG
[ENA]
¡û
>C201110572
CP042344
Betaproteobacteria
Comamonas sp. NLF-7-7 NLF 7-7 [CP042344]
442482
442398
-
Leu
GAG
-
¡û
>C201135018
CP043568
Betaproteobacteria
Comamonas testosteroni T5-67 [CP043568]
1299150
1299234
+
Leu
GAG
-
¡û
>W10105771
ACXV01000001
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
189575
189659
+
Leu
GAG
[ENA]
¡û
>C211133328
CP060413
Betaproteobacteria
Comamonas kerstersii 3132976 [CP060413]
3172765
3172681
-
Leu
GAG
-
¡û
>C211369707
CP079745
Betaproteobacteria
Comamonas aquatica B1 [CP079745]
878910
878994
+
Leu
GAG
-
¡û
>W1510015191
BBQP01000003
Betaproteobacteria
Comamonas testosteroni KF712 [BBQP]
303288
303372
+
Leu
GAG
[ENA]
¡û
>C211405997
CP083911
Betaproteobacteria
Tepidimonas taiwanensis LMG 22826 [CP083911]
1421424
1421340
-
Leu
GAG
-
¡û
>C211406282
CP083938
Betaproteobacteria
Comamonas thiooxydans CSUSB4 [CP083938]
1227940
1228024
+
Leu
GAG
-
¡û
>W1510019787
BBXH01000006
Betaproteobacteria
Comamonas sp. E6 [BBXH]
175456
175540
+
Leu
GAG
[ENA]
¡û
>C231341458
CP094239
Betaproteobacteria
Comamonas sp. 7D-2evo1 [CP094239]
4482103
4482019
-
Leu
GAG
-
¡û
>C231441535
CP101743
Betaproteobacteria
Comamonas sp. C11 [CP101743]
1354509
1354593
+
Leu
GAG
-
¡û
>C231516391
CP107548
Betaproteobacteria
Pusillimonas sp. M17 [CP107548]
2667383
2667299
-
Leu
GAG
-
¡û
>C231529474
CP110257
Betaproteobacteria
Schlegelella aquatica LMG 23380 [CP110257]
2174861
2174777
-
Leu
GAG
-
¡û
>C241162618
CP053920
Betaproteobacteria
Comamonas thiooxydans QYY [CP053920]
4737413
4737497
+
Leu
GAG
-
¡û
>C241262509
CP125947
Betaproteobacteria
Comamonas resistens ZM22 [CP125947]
1281061
1281145
+
Leu
GAG
-
¡û
>C241289779
CP129672
Betaproteobacteria
Comamonas testosteroni MWF001 [CP129672]
1420336
1420252
-
Leu
GAG
-
¡û
>W11108091
ACXV01000001
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
189575
189659
+
Leu
GAG
[ENA]
¡û
>W1511204470
JMRS01000018
Betaproteobacteria
Comamonas testosteroni I2 [JMRS]
51952
51868
-
Leu
GAG
[ENA]
¡û
>W1511310853
JPQP01000022
Betaproteobacteria
Bordetella trematum HR18 [JPQP]
537
453
-
Leu
GAG
[ENA]
¡û
>W1511584168
LAVC01000013
Betaproteobacteria
Comamonas thiooxydans KY3 [LAVC]
103585
103669
+
Leu
GAG
[ENA]
¡û
>W1511595708
LBNE01000002
Betaproteobacteria
Kerstersia gyiorum CG1 [LBNE]
25817
25733
-
Leu
GAG
[ENA]
¡û
>W1610028401
AWOR01000001
Betaproteobacteria
Comamonas testosteroni [AWOR]
684190
684274
+
Leu
GAG
[ENA]
¡û
>W1610028522
AWOS01000079
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOS]
56733
56817
+
Leu
GAG
[ENA]
¡û
>W1610028691
AWOV01000044
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOV]
250914
250998
+
Leu
GAG
[ENA]
¡û
>W1610028972
AWTP01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTP]
273671
273755
+
Leu
GAG
[ENA]
¡û
>W1610062763
BCNT01000003
Betaproteobacteria
Comamonas terrae [BCNT]
137458
137374
-
Leu
GAG
[ENA]
¡û
>W1610085405
CTRI01000027
Betaproteobacteria
Thiomonas arsenitoxydans B1 [CTRI]
87467
87383
-
Leu
GAG
[ENA]
¡û
>W1610085528
CTRL01000047
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
84821
84737
-
Leu
GAG
[ENA]
¡û
>W1610085578
CTRM01000059
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
235266
235182
-
Leu
GAG
[ENA]
¡û
>W1610447539
FKBR01000022
Betaproteobacteria
Bordetella trematum [FKBR]
33427
33343
-
Leu
GAG
[ENA]
¡û
>W1610845622
LPXH01000034
Betaproteobacteria
Comamonas kerstersii 12322-1 [LPXH]
170082
170166
+
Leu
GAG
[ENA]
¡û
>W1710024303
AWOR01000001
Betaproteobacteria
Comamonas testosteroni [AWOR]
684190
684274
+
Leu
GAG
[ENA]
¡û
>W1710024424
AWOS01000079
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOS]
56733
56817
+
Leu
GAG
[ENA]
¡û
>W1710024593
AWOV01000044
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWOV]
250914
250998
+
Leu
GAG
[ENA]
¡û
>W1710026342
AWTP01000001
Betaproteobacteria
Comamonas thiooxydans testosteroni [AWTP]
273671
273755
+
Leu
GAG
[ENA]
¡û
>W1710060239
BCNT01000003
Betaproteobacteria
Comamonas terrae [BCNT]
137458
137374
-
Leu
GAG
[ENA]
¡û
>W1710089994
CTRI01000027
Betaproteobacteria
Thiomonas arsenitoxydans B1 [CTRI]
87467
87383
-
Leu
GAG
[ENA]
¡û
>W1710090117
CTRL01000047
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
84821
84737
-
Leu
GAG
[ENA]
¡û
>W1710090167
CTRM01000059
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
235266
235182
-
Leu
GAG
[ENA]
¡û
>W1710447167
FKBR01000022
Betaproteobacteria
Bordetella trematum [FKBR]
33427
33343
-
Leu
GAG
[ENA]
¡û
>W1710586419
FQXE01000011
Betaproteobacteria
Pollutimonas bauzanensis [FQXE]
79746
79830
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK