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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.121514 (113 seq.)
>W1711540091
MLZL01000010
Actinomycetota
Bifidobacterium animalis subsp. lactis [MLZL]
6051
5970
-
Leu
TAA
[ENA]
¡û
>WENV180191148
OAXB01001455
[OAXB] human gut metagenome; faeces
412
333
-
Leu
TAA
[ENA]
¢þ
>WENV180217430
OBAR01001610
[OBAR] human gut metagenome; human gut
3327
3247
-
Leu
TAA
[ENA]
¢þ
>WENV180278327
OBHX01003442
[OBHX] metagenome; feces
6079
5999
-
Leu
TAA
[ENA]
¢þ
>WENV180333072
OBLF01000182
[OBLF] metagenome; feces
73049
73129
+
Leu
TAA
[ENA]
¢þ
>WENV180347454
OBLO01000355
[OBLO] metagenome; feces
2764
2844
+
Leu
TAA
[ENA]
¢þ
>WENV180462437
OBYB01002490
[OBYB] human gut metagenome; faeces
11
90
+
Leu
TAA
[ENA]
¢þ
>WENV180478385
OBZB01000772
[OBZB] human gut metagenome; faeces
1618
1697
+
Leu
TAA
[ENA]
¢þ
>WENV180598757
OCPN01000102
[OCPN] human gut metagenome; faeces
3483
3403
-
Leu
TAA
[ENA]
¢þ
>WENV181436268
OGDF01014182
[OGDF] human gut metagenome; human gut
3506
3586
+
Leu
TAA
[ENA]
¢þ
>WENV181439670
OGDN01000109
[OGDN] human gut metagenome; human gut
145207
145287
+
Leu
TAA
[ENA]
¢þ
>W08009112
ABOT01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [ABOT]
145154
145235
+
Leu
TAA
[ENA]
¡û
>WENV181752742
OGQQ01014087
[OGQQ] human gut metagenome; faeces
1031
1111
+
Leu
TAA
[ENA]
¢þ
>W141258183
CBWX010000073
Actinomycetota
Bifidobacterium animalis subsp. lactis CECT 8145 [CBWX]
701691
701772
+
Leu
TAA
[ENA]
¡û
>WENV182821831
OKBA01002835
[OKBA] human gut metagenome; human gut
1512
1591
+
Leu
TAA
[ENA]
¢þ
>WENV182827235
OKCX01000912
[OKCX] human gut metagenome; human gut
1896
1975
+
Leu
TAA
[ENA]
¢þ
>WENV182864970
OKQG01003303
[OKQG] human gut metagenome; human gut
270
191
-
Leu
TAA
[ENA]
¢þ
>WENV182865366
OKQJ01000808
[OKQJ] human gut metagenome; human gut
1827
1748
-
Leu
TAA
[ENA]
¢þ
>WENV183136308
OLOF01000750
[OLOF] human gut metagenome; faeces
7008
7088
+
Leu
TAA
[ENA]
¢þ
>WENV183146836
OLOM01027865
[OLOM] human gut metagenome; faeces
1191
1271
+
Leu
TAA
[ENA]
¢þ
>WENV183147474
OLON01000301
[OLON] human gut metagenome; faeces
30337
30417
+
Leu
TAA
[ENA]
¢þ
>WENV183171667
OLPC01000634
[OLPC] human gut metagenome; faeces
3476
3396
-
Leu
TAA
[ENA]
¢þ
>WENV183174543
OLPE01002015
[OLPE] human gut metagenome; faeces
6099
6179
+
Leu
TAA
[ENA]
¢þ
>WENV183188633
OLPP01006427
[OLPP] human gut metagenome; faeces
167
247
+
Leu
TAA
[ENA]
¢þ
>WENV183214112
OLQE01001547
[OLQE] human gut metagenome; faeces
12056
12135
+
Leu
TAA
[ENA]
¢þ
>WENV183215749
OLQG01013087
[OLQG] human gut metagenome; faeces
123
43
-
Leu
TAA
[ENA]
¢þ
>WENV183291484
OLSI01002329
[OLSI] human gut metagenome; faeces
3349
3269
-
Leu
TAA
[ENA]
¢þ
>WENV183297900
OLSM01016011
[OLSM] human gut metagenome; faeces
466
386
-
Leu
TAA
[ENA]
¢þ
>WENV183562296
OOBW01000027
[OOBW] human gut metagenome; human gut
100857
100936
+
Leu
TAA
[ENA]
¢þ
>WENV183581199
OOCN01005330
[OOCN] human gut metagenome; human gut
3446
3367
-
Leu
TAA
[ENA]
¢þ
>WENV183792956
PPYF01466564
[PPYF] human gut metagenome; stool from patient with Crohn's disease
902
822
-
Leu
TAA
[ENA]
¢þ
>WENV170636803
JFBN01306626
[JFBN] chicken gut metagenome; ceca of Broiler chicken
683
604
-
Leu
TAA
[ENA]
¢þ
>C181023441
CP017098
Actinomycetota
Bifidobacterium animalis BL3 [CP017098]
1159128
1159048
-
Leu
TAA
-
¡û
>C181071798
CP022724
Actinomycetota
Bifidobacterium animalis subsp. lactis S7 [CP022724]
1661218
1661138
-
Leu
TAA
-
¡û
>C191057553
CP028460
Actinomycetota
Bifidobacterium animalis subsp. animalis CNCM I-4602 [CP028460]
1179702
1179622
-
Leu
TAA
-
¡û
>W141523696
JGYM01000007
Actinomycetota
Bifidobacterium animalis subsp. animalis [JGYM]
446345
446426
+
Leu
TAA
[ENA]
¡û
>C191073867
CP031154
Actinomycetota
Bifidobacterium animalis subsp. lactis HN019 [CP031154]
1158998
1158918
-
Leu
TAA
-
¡û
>W141524212
JGYW01000011
Actinomycetota
Bifidobacterium gallicum DSM 20093 = LMG 11596 [JGYW]
3371
3290
-
Leu
TAA
[ENA]
¡û
>W141524233
JGYX01000002
Actinomycetota
Bifidobacterium pullorum gallinarum [JGYX]
74082
74003
-
Leu
TAA
[ENA]
¡û
>C191078829
CP031703
Actinomycetota
Bifidobacterium animalis subsp. lactis IDCC4301 [CP031703]
1013247
1013327
+
Leu
TAA
-
¡û
>W141524792
JGZJ01000001
Actinomycetota
Bifidobacterium pullorum [JGZJ]
295312
295391
+
Leu
TAA
[ENA]
¡û
>W141524960
JGZM01000004
Actinomycetota
Bifidobacterium pullorum DSM 6531 = LMG 14934 [JGZM]
69134
69055
-
Leu
TAA
[ENA]
¡û
>W141525056
JGZO01000004
Actinomycetota
Bifidobacterium scardovii [JGZO]
92801
92722
-
Leu
TAA
[ENA]
¡û
>C191143367
CP035464
Actinomycetota
Bifidobacterium pullorum subsp. gallinarum CACC 514 [CP035464]
1083399
1083478
+
Leu
TAA
-
¡û
>C191144120
CP035497
Actinomycetota
Bifidobacterium animalis 01 [CP035497]
1159132
1159052
-
Leu
TAA
-
¡û
>W09111566
ABXB01000038
Actinomycetota
Bifidobacterium gallicum DSM 20093 [ABXB]
3596
3515
-
Leu
TAA
[ENA]
¡û
>W1910179746
BJKG01000004
Actinomycetota
Bifidobacterium animalis J063 [BJKG]
145263
145343
+
Leu
TAA
[ENA]
¡û
>W1910179802
BJKH01000011
Actinomycetota
Bifidobacterium animalis J218 [BJKH]
145259
145339
+
Leu
TAA
[ENA]
¡û
>W1910179867
BJKI01000006
Actinomycetota
Bifidobacterium animalis J231 [BJKI]
145264
145344
+
Leu
TAA
[ENA]
¡û
>W1910342683
FTRE01000001
Actinomycetota
Bifidobacterium animalis [FTRE]
876547
876467
-
Leu
TAA
[ENA]
¡û
>W1910343302
FTRP01000001
Actinomycetota
Bifidobacterium animalis [FTRP]
876548
876468
-
Leu
TAA
[ENA]
¡û
>C141002664
CP003941
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27673 [CP003941]
1176588
1176507
-
Leu
TAA
[Ensembl]
¡û
>C09101001
CP001213
Actinomycetota
Bifidobacterium animalis subsp. lactis AD011 [CP001213]
1322130
1322211
+
Leu
TAA
[Ensembl]
¡û
>C09101060
CP001515
Actinomycetota
Bifidobacterium animalis subsp. lactis Bl-04 Bl-04; ATCC SD5219 [CP001515]
1159074
1158993
-
Leu
TAA
[Ensembl]
¡û
>C09101108
CP001606
Actinomycetota
Bifidobacterium animalis subsp. lactis DSM 10140 [CP001606]
1159009
1158928
-
Leu
TAA
[Ensembl]
¡û
>W1910910802
NHMR02000001
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [NHMR]
310514
310593
+
Leu
TAA
[ENA]
¡û
>W1910923033
NIGQ01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis LMG P-17502_2 [NIGQ]
54850
54770
-
Leu
TAA
[ENA]
¡û
>W1910923089
NIGR01000005
Actinomycetota
Bifidobacterium animalis subsp. lactis LMG P-17502_1 [NIGR]
145189
145269
+
Leu
TAA
[ENA]
¡û
>W1810084979
PESQ01000007
Actinomycetota
Bifidobacterium animalis subsp. lactis BB-12 [PESQ]
6066
5986
-
Leu
TAA
[ENA]
¡û
>W1810121975
PHUS01000005
Actinomycetota
Bifidobacterium animalis subsp. lactis BM 25 [PHUS]
6068
5988
-
Leu
TAA
[ENA]
¡û
>W1810541598
QDIK01000006
Actinomycetota
Bifidobacterium animalis subsp. lactis DS28_2 [QDIK]
91468
91548
+
Leu
TAA
[ENA]
¡û
>W1810541609
QDIL01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis DS27_2 [QDIL]
145281
145361
+
Leu
TAA
[ENA]
¡û
>W1810541712
QDIN01000001
Actinomycetota
Bifidobacterium animalis subsp. lactis DS24_2 [QDIN]
386015
385935
-
Leu
TAA
[ENA]
¡û
>W1810541788
QDIO01000047
Actinomycetota
Bifidobacterium animalis subsp. lactis DS23_2 [QDIO]
32801
32721
-
Leu
TAA
[ENA]
¡û
>W1810541809
QDIP01000001
Actinomycetota
Bifidobacterium animalis DS2_2 [QDIP]
386088
386008
-
Leu
TAA
[ENA]
¡û
>W1810541909
QDIR01000001
Actinomycetota
Bifidobacterium animalis DS15_2 [QDIR]
386002
385922
-
Leu
TAA
[ENA]
¡û
>W1810542002
QDIT01000001
Actinomycetota
Bifidobacterium animalis DS11_2 [QDIT]
145281
145361
+
Leu
TAA
[ENA]
¡û
>W1810542051
QDIU01000001
Actinomycetota
Bifidobacterium animalis DS1_2 [QDIU]
145281
145361
+
Leu
TAA
[ENA]
¡û
>W1810542123
QDIV01000042
Actinomycetota
Bifidobacterium animalis subsp. lactis CF3_2 [QDIV]
15283
15363
+
Leu
TAA
[ENA]
¡û
>W1810542316
QDIZ01000006
Actinomycetota
Bifidobacterium animalis DS20_2 [QDIZ]
145208
145288
+
Leu
TAA
[ENA]
¡û
>W1810837805
QSSU01000002
Actinomycetota
Bifidobacterium animalis TF04-14 [QSSU]
145201
145281
+
Leu
TAA
[ENA]
¡û
>W1810839874
QSUF01000001
Actinomycetota
Bifidobacterium animalis OM05-7AA [QSUF]
196235
196155
-
Leu
TAA
[ENA]
¡û
>C151000554
AP012331
Actinomycetota
Bifidobacterium scardovii JCM 12489 = DSM 13734 [AP012331]
1712744
1712665
-
Leu
TAA
[Ensembl]
¡û
>C151026483
CP007522
Actinomycetota
Bifidobacterium animalis subsp. lactis KLDS2.0603 [CP007522]
1159039
1158958
-
Leu
TAA
[Ensembl]
¡û
>C151033704
CP007755
Actinomycetota
Bifidobacterium animalis RH [CP007755]
1159489
1159408
-
Leu
TAA
[Ensembl]
¡û
>C151042226
CP009045
Actinomycetota
Bifidobacterium animalis subsp. lactis BF052 [CP009045]
1158925
1158844
-
Leu
TAA
[Ensembl]
¡û
>C151068797
CP010433
Actinomycetota
Bifidobacterium animalis A6 [CP010433]
1159132
1159051
-
Leu
TAA
[Ensembl]
¡û
>C10101313
CP001853
Actinomycetota
Bifidobacterium animalis subsp. lactis BB-12 [CP001853]
1793787
1793706
-
Leu
TAA
[Ensembl]
¡û
>C10101364
CP001892
Actinomycetota
Bifidobacterium animalis subsp. lactis V9 [CP001892]
1159130
1159049
-
Leu
TAA
[Ensembl]
¡û
>C11101920
CP003039
Actinomycetota
Bifidobacterium animalis subsp. lactis BLC1 [CP003039]
1159098
1159017
-
Leu
TAA
[Ensembl]
¡û
>C11101969
CP002915
Actinomycetota
Bifidobacterium animalis subsp. lactis CNCM I-2494 [CP002915]
1158693
1158612
-
Leu
TAA
[Ensembl]
¡û
>W1511437595
JULC01000131
Actinomycetota
Bifidobacterium scardovii 981_BLON [JULC]
6915
6994
+
Leu
TAA
[ENA]
¡û
>W1511592069
LBIB01000034
Actinomycetota
Bifidobacterium scardovii JCM 12489 = DSM 13734 [LBIB]
133083
133004
-
Leu
TAA
[ENA]
¡û
>C121002627
CP002567
Actinomycetota
Bifidobacterium animalis subsp. animalis ATCC 25527 [CP002567]
1179837
1179756
-
Leu
TAA
[Ensembl]
¡û
>C121013663
CP003497
Actinomycetota
Bifidobacterium animalis subsp. lactis B420 [CP003497]
1159126
1159045
-
Leu
TAA
[Ensembl]
¡û
>C121013712
CP003498
Actinomycetota
Bifidobacterium animalis subsp. lactis Bi-07 [CP003498]
1159129
1159048
-
Leu
TAA
[Ensembl]
¡û
>C161087451
CP015407
Actinomycetota
Bifidobacterium animalis subsp. animalis YL2 [CP015407]
1629984
1629905
-
Leu
TAA
[Ensembl]
¡û
>W1610027681
AWFK01000001
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0483 [AWFK]
184641
184720
+
Leu
TAA
[ENA]
¡û
>W1610027738
AWFL01000005
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27536 [AWFL]
145050
145131
+
Leu
TAA
[ENA]
¡û
>W1610027781
AWFM01000002
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27674 [AWFM]
145057
145138
+
Leu
TAA
[ENA]
¡û
>W1610027880
AWFN01000008
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0499 [AWFN]
42234
42313
+
Leu
TAA
[ENA]
¡û
>W1610027929
AWFO01000012
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 1489 [AWFO]
42279
42360
+
Leu
TAA
[ENA]
¡û
>W1610027946
AWFP01000006
Actinomycetota
Bifidobacterium animalis subsp. lactis ATCC 27673 [AWFP]
216374
216293
-
Leu
TAA
[ENA]
¡û
>W1610028013
AWFQ01000002
Actinomycetota
Bifidobacterium animalis subsp. animalis ATCC 27672 [AWFQ]
380150
380069
-
Leu
TAA
[ENA]
¡û
>W1610083134
CBUQ010000007
Actinomycetota
Bifidobacterium animalis subsp. animalis IM386 [CBUQ]
739479
739398
-
Leu
TAA
[ENA]
¡û
>W121031692
AHGW01000004
Actinomycetota
Bifidobacterium animalis subsp. lactis BS 01 [AHGW]
142271
142190
-
Leu
TAA
[ENA]
¡û
>C131012152
CP004053
Actinomycetota
Bifidobacterium animalis subsp. lactis Bl12 [CP004053]
1158989
1158908
-
Leu
TAA
[Ensembl]
¡û
>W1610518583
JDTM01000005
Actinomycetota
Bifidobacterium pullorum DSM 6531 = LMG 14934 [JDTM]
205437
205516
+
Leu
TAA
[ENA]
¡û
>W1610518642
JDTN01000046
Actinomycetota
Bifidobacterium scardovii JCM 12489 = DSM 13734 [JDTN]
6988
7067
+
Leu
TAA
[ENA]
¡û
>W1610518643
JDTN01000046
Actinomycetota
Bifidobacterium scardovii JCM 12489 = DSM 13734 [JDTN]
18607
18528
-
Leu
TAA
[ENA]
¡û
>W1610519078
JDTW01000031
Actinomycetota
Bifidobacterium gallicum DSM 20093 = LMG 11596 [JDTW]
3020
2939
-
Leu
TAA
[ENA]
¡û
>W1610519573
JDUI01000002
Actinomycetota
Bifidobacterium pullorum DSM 20433 [JDUI]
55464
55383
-
Leu
TAA
[ENA]
¡û
>W1610519829
JDUN01000003
Actinomycetota
Bifidobacterium pullorum DSM 20670 [JDUN]
188769
188848
+
Leu
TAA
[ENA]
¡û
>W1710023889
AWFK01000001
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0483 [AWFK]
184641
184720
+
Leu
TAA
[ENA]
¡û
>W1710023990
AWFN01000008
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 0499 [AWFN]
42234
42313
+
Leu
TAA
[ENA]
¡û
>W1710024039
AWFO01000012
Actinomycetota
Bifidobacterium animalis subsp. animalis MCC 1489 [AWFO]
42279
42360
+
Leu
TAA
[ENA]
¡û
>W1710088254
CBUQ010000007
Actinomycetota
Bifidobacterium animalis subsp. animalis IM386 [CBUQ]
739479
739398
-
Leu
TAA
[ENA]
¡û
>W1710614103
JDTM01000005
Actinomycetota
Bifidobacterium pullorum DSM 6531 = LMG 14934 [JDTM]
205437
205516
+
Leu
TAA
[ENA]
¡û
>W1710614162
JDTN01000046
Actinomycetota
Bifidobacterium scardovii JCM 12489 = DSM 13734 [JDTN]
6988
7067
+
Leu
TAA
[ENA]
¡û
>W1710614163
JDTN01000046
Actinomycetota
Bifidobacterium scardovii JCM 12489 = DSM 13734 [JDTN]
18607
18528
-
Leu
TAA
[ENA]
¡û
>W1710614533
JDTW01000031
Actinomycetota
Bifidobacterium gallicum DSM 20093 = LMG 11596 [JDTW]
3020
2939
-
Leu
TAA
[ENA]
¡û
>W1710615028
JDUI01000002
Actinomycetota
Bifidobacterium pullorum DSM 20433 [JDUI]
55464
55383
-
Leu
TAA
[ENA]
¡û
>W1710615242
JDUN01000003
Actinomycetota
Bifidobacterium pullorum DSM 20670 [JDUN]
188769
188848
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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