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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.121559 (123 seq.)
>W1710864928
LMGG01000007
Actinomycetota
Nocardioides sp. Root151 [LMGG]
593491
593572
+
Gln
TTG
[ENA]
¡û
>W1710867729
LMIN01000008
Actinomycetota
Nocardioides sp. Root224 [LMIN]
566886
566965
+
Gln
TTG
[ENA]
¡û
>W1711127129
LUPQ01000052
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
38786
38867
+
Gln
TTG
[ENA]
¡û
>C171096259
CP019606
Actinomycetota
Tessaracoccus aquimaris NSG39 [CP019606]
2401149
2401068
-
Gln
TTG
-
¡û
>WENV180356082
OBNJ01027140
[OBNJ] sediment metagenome; sediment
37
117
+
Gln
TTG
[ENA]
¢þ
>WENV180690157
OCZS010000099
[OCZS] soil metagenome; soil
20138
20059
-
Gln
TTG
[ENA]
¢þ
>WENV180690377
OCZS010004520
[OCZS] soil metagenome; soil
1298
1219
-
Gln
TTG
[ENA]
¢þ
>WENV180698190
ODDE01073254
[ODDE] human metagenome; G_DNA_Supragingival plaque
96
176
+
Gln
TTG
[ENA]
¢þ
>WENV180728633
ODGU01072379
[ODGU] human metagenome; G_DNA_Supragingival plaque
604
524
-
Gln
TTG
[ENA]
¢þ
>WENV180728772
ODGU01093057
[ODGU] human metagenome; G_DNA_Supragingival plaque
573
653
+
Gln
TTG
[ENA]
¢þ
>WENV180731926
ODGW01037848
[ODGW] human metagenome; G_DNA_Supragingival plaque
219
139
-
Gln
TTG
[ENA]
¢þ
>WENV180733859
ODGZ01001079
[ODGZ] human metagenome; G_DNA_Supragingival plaque
1233
1151
-
Gln
TTG
[ENA]
¢þ
>WENV180734146
ODGZ01003161
[ODGZ] human metagenome; G_DNA_Supragingival plaque
5804
5884
+
Gln
TTG
[ENA]
¢þ
>WENV180735583
ODHB01000066
[ODHB] human metagenome; G_DNA_Supragingival plaque
9190
9110
-
Gln
TTG
[ENA]
¢þ
>WENV180749897
ODHS01000085
[ODHS] human metagenome; G_DNA_Supragingival plaque
41492
41572
+
Gln
TTG
[ENA]
¢þ
>WENV180754986
ODHU01005962
[ODHU] human metagenome; G_DNA_Supragingival plaque
1346
1428
+
Gln
TTG
[ENA]
¢þ
>WENV180777206
ODIL01000424
[ODIL] human metagenome; G_DNA_Supragingival plaque
2112
2192
+
Gln
TTG
[ENA]
¢þ
>WENV180778631
ODIM01024768
[ODIM] human metagenome; G_DNA_Supragingival plaque
272
192
-
Gln
TTG
[ENA]
¢þ
>WENV180782298
ODIP01065527
[ODIP] human metagenome; G_DNA_Supragingival plaque
215
133
-
Gln
TTG
[ENA]
¢þ
>WENV180788366
ODIS01054110
[ODIS] human metagenome; G_DNA_Supragingival plaque
426
506
+
Gln
TTG
[ENA]
¢þ
>WENV180796607
ODJB01008147
[ODJB] human metagenome; G_DNA_Supragingival plaque
1399
1479
+
Gln
TTG
[ENA]
¢þ
>WENV180801565
ODJD01056250
[ODJD] human metagenome; G_DNA_Supragingival plaque
395
477
+
Gln
TTG
[ENA]
¢þ
>WENV180804534
ODJG01005096
[ODJG] human metagenome; G_DNA_Supragingival plaque
2622
2542
-
Gln
TTG
[ENA]
¢þ
>WENV180804588
ODJG01006674
[ODJG] human metagenome; G_DNA_Supragingival plaque
1349
1267
-
Gln
TTG
[ENA]
¢þ
>WENV180814143
ODJO01008073
[ODJO] human metagenome; G_DNA_Supragingival plaque
453
533
+
Gln
TTG
[ENA]
¢þ
>WENV180823262
ODJW01012903
[ODJW] human metagenome; G_DNA_Supragingival plaque
1228
1308
+
Gln
TTG
[ENA]
¢þ
>WENV180824720
ODJX01033591
[ODJX] human metagenome; G_DNA_Supragingival plaque
302
222
-
Gln
TTG
[ENA]
¢þ
>WENV180833266
ODKC01023496
[ODKC] human metagenome; G_DNA_Supragingival plaque
553
471
-
Gln
TTG
[ENA]
¢þ
>WENV180833339
ODKC01033664
[ODKC] human metagenome; G_DNA_Supragingival plaque
424
344
-
Gln
TTG
[ENA]
¢þ
>WENV180834019
ODKD01001862
[ODKD] human metagenome; G_DNA_Supragingival plaque
3425
3505
+
Gln
TTG
[ENA]
¢þ
>WENV180834371
ODKD01016578
[ODKD] human metagenome; G_DNA_Supragingival plaque
833
913
+
Gln
TTG
[ENA]
¢þ
>WENV180835777
ODKE01012086
[ODKE] human metagenome; G_DNA_Supragingival plaque
489
407
-
Gln
TTG
[ENA]
¢þ
>WENV180843277
ODKN01001466
[ODKN] human metagenome; G_DNA_Supragingival plaque
3273
3355
+
Gln
TTG
[ENA]
¢þ
>WENV180844332
ODKN01079090
[ODKN] human metagenome; G_DNA_Supragingival plaque
297
377
+
Gln
TTG
[ENA]
¢þ
>WENV180847430
ODKT01082589
[ODKT] human metagenome; G_DNA_Supragingival plaque
481
561
+
Gln
TTG
[ENA]
¢þ
>WENV180847489
ODKT01091324
[ODKT] human metagenome; G_DNA_Supragingival plaque
81
1
-
Gln
TTG
[ENA]
¢þ
>WENV180859548
ODLD01001244
[ODLD] human metagenome; G_DNA_Supragingival plaque
7409
7329
-
Gln
TTG
[ENA]
¢þ
>WENV180922794
ODTJ01011560
[ODTJ] human metagenome; G_DNA_Supragingival plaque
2127
2207
+
Gln
TTG
[ENA]
¢þ
>WENV180924460
ODTK01005423
[ODTK] human metagenome; G_DNA_Supragingival plaque
4617
4697
+
Gln
TTG
[ENA]
¢þ
>WENV180927474
ODTM01000778
[ODTM] human metagenome; G_DNA_Supragingival plaque
10397
10317
-
Gln
TTG
[ENA]
¢þ
>WENV180927531
ODTM01001084
[ODTM] human metagenome; G_DNA_Supragingival plaque
9207
9127
-
Gln
TTG
[ENA]
¢þ
>WENV180933469
ODTR01000234
[ODTR] human metagenome; G_DNA_Supragingival plaque
29460
29380
-
Gln
TTG
[ENA]
¢þ
>WENV180934404
ODTS01000020
[ODTS] human metagenome; G_DNA_Subgingival plaque
39460
39380
-
Gln
TTG
[ENA]
¢þ
>WENV180938245
ODTX01001073
[ODTX] human metagenome; G_DNA_Supragingival plaque
2994
3074
+
Gln
TTG
[ENA]
¢þ
>WENV180938447
ODTX01002047
[ODTX] human metagenome; G_DNA_Supragingival plaque
2
82
+
Gln
TTG
[ENA]
¢þ
>WENV180943900
ODUC01003857
[ODUC] human metagenome; G_DNA_Supragingival plaque
3104
3024
-
Gln
TTG
[ENA]
¢þ
>WENV180958350
ODUL01003238
[ODUL] human metagenome; G_DNA_Supragingival plaque
2617
2537
-
Gln
TTG
[ENA]
¢þ
>WENV180963981
ODUO01000057
[ODUO] human metagenome; G_DNA_Supragingival plaque
38892
38812
-
Gln
TTG
[ENA]
¢þ
>WENV180973280
ODUW01002814
[ODUW] human metagenome; G_DNA_Supragingival plaque
2910
2990
+
Gln
TTG
[ENA]
¢þ
>WENV180973531
ODUW01007868
[ODUW] human metagenome; G_DNA_Supragingival plaque
1349
1267
-
Gln
TTG
[ENA]
¢þ
>WENV180980381
ODVE01000091
[ODVE] human metagenome; G_DNA_Supragingival plaque
46358
46438
+
Gln
TTG
[ENA]
¢þ
>WENV180982592
ODVF01000136
[ODVF] human metagenome; G_DNA_Supragingival plaque
27330
27250
-
Gln
TTG
[ENA]
¢þ
>WENV180999993
ODVT01135849
[ODVT] human metagenome; G_DNA_Buccal mucosa
253
173
-
Gln
TTG
[ENA]
¢þ
>WENV181003271
ODVX01007911
[ODVX] human metagenome; G_DNA_Supragingival plaque
3821
3901
+
Gln
TTG
[ENA]
¢þ
>WENV181008313
ODWE01003812
[ODWE] human metagenome; G_DNA_Supragingival plaque
5391
5473
+
Gln
TTG
[ENA]
¢þ
>WENV181008437
ODWE01005346
[ODWE] human metagenome; G_DNA_Supragingival plaque
3094
3174
+
Gln
TTG
[ENA]
¢þ
>WENV181008702
ODWE01011324
[ODWE] human metagenome; G_DNA_Supragingival plaque
2725
2805
+
Gln
TTG
[ENA]
¢þ
>WENV181012831
ODWK01038180
[ODWK] human metagenome; G_DNA_Supragingival plaque
173
253
+
Gln
TTG
[ENA]
¢þ
>WENV181020402
ODWU01170635
[ODWU] human metagenome; G_DNA_Supragingival plaque
22
104
+
Gln
TTG
[ENA]
¢þ
>WENV181050039
ODYD01005003
[ODYD] human metagenome; G_DNA_Supragingival plaque
2683
2603
-
Gln
TTG
[ENA]
¢þ
>WENV181050079
ODYD01005857
[ODYD] human metagenome; G_DNA_Supragingival plaque
3904
3984
+
Gln
TTG
[ENA]
¢þ
>WENV181063523
ODYP01001295
[ODYP] human metagenome; G_DNA_Supragingival plaque
6795
6875
+
Gln
TTG
[ENA]
¢þ
>WENV181066922
ODZI01003473
[ODZI] human metagenome; G_DNA_Supragingival plaque
323
241
-
Gln
TTG
[ENA]
¢þ
>WENV181070674
OEAE01005613
[OEAE] human metagenome; G_DNA_Supragingival plaque
2994
3074
+
Gln
TTG
[ENA]
¢þ
>WENV181070774
OEAE01009377
[OEAE] human metagenome; G_DNA_Supragingival plaque
1619
1539
-
Gln
TTG
[ENA]
¢þ
>WENV181070788
OEAE01010368
[OEAE] human metagenome; G_DNA_Supragingival plaque
176
96
-
Gln
TTG
[ENA]
¢þ
>WENV181076562
OEAP01007514
[OEAP] human metagenome; G_DNA_Supragingival plaque
2128
2208
+
Gln
TTG
[ENA]
¢þ
>WENV181078801
OEAS01000574
[OEAS] human metagenome; G_DNA_Supragingival plaque
5696
5778
+
Gln
TTG
[ENA]
¢þ
>WENV181079321
OEAS01004591
[OEAS] human metagenome; G_DNA_Supragingival plaque
2259
2339
+
Gln
TTG
[ENA]
¢þ
>WENV181082532
OEAV01000042
[OEAV] human metagenome; G_DNA_Supragingival plaque
41332
41250
-
Gln
TTG
[ENA]
¢þ
>WENV181091086
OEBC01012414
[OEBC] human metagenome; G_DNA_Supragingival plaque
621
539
-
Gln
TTG
[ENA]
¢þ
>WENV181107904
OEEI01035298
[OEEI] human metagenome; G_DNA_Supragingival plaque
550
468
-
Gln
TTG
[ENA]
¢þ
>WENV181122122
OEFL01086824
[OEFL] human metagenome; G_DNA_Supragingival plaque
209
289
+
Gln
TTG
[ENA]
¢þ
>WENV181138124
OEGJ01118614
[OEGJ] human metagenome; G_DNA_Supragingival plaque
274
192
-
Gln
TTG
[ENA]
¢þ
>WENV181143925
OEHM01023639
[OEHM] human metagenome; G_DNA_Supragingival plaque
495
575
+
Gln
TTG
[ENA]
¢þ
>WENV181146125
OEHQ01001125
[OEHQ] human metagenome; G_DNA_Supragingival plaque
9130
9050
-
Gln
TTG
[ENA]
¢þ
>WENV181146427
OEHQ01005340
[OEHQ] human metagenome; G_DNA_Supragingival plaque
3761
3841
+
Gln
TTG
[ENA]
¢þ
>WENV181152598
OEIA01003027
[OEIA] human metagenome; G_DNA_Supragingival plaque
5824
5904
+
Gln
TTG
[ENA]
¢þ
>WENV181156180
OEIE01004583
[OEIE] human metagenome; G_DNA_Supragingival plaque
3260
3340
+
Gln
TTG
[ENA]
¢þ
>WENV181159281
OEIH01134778
[OEIH] human metagenome; G_DNA_Supragingival plaque
104
183
+
Gln
TTG
[ENA]
¢þ
>WENV181160665
OEIK01022379
[OEIK] human metagenome; G_DNA_Supragingival plaque
31
113
+
Gln
TTG
[ENA]
¢þ
>WENV181177538
OEJS01004430
[OEJS] human metagenome; G_DNA_Supragingival plaque
2670
2590
-
Gln
TTG
[ENA]
¢þ
>WENV181179278
OEJT01002693
[OEJT] human metagenome; G_DNA_Supragingival plaque
1770
1690
-
Gln
TTG
[ENA]
¢þ
>WENV181181901
OEJV01000599
[OEJV] human metagenome; G_DNA_Supragingival plaque
12838
12758
-
Gln
TTG
[ENA]
¢þ
>WENV181189513
OEOF01067764
[OEOF] activated sludge metagenome; Activated Sludge
215
294
+
Gln
TTG
[ENA]
¢þ
>WENV183508538
OMHE01000220
[OMHE] human oral metagenome; human oral
3038
2956
-
Gln
TTG
[ENA]
¢þ
>WENV183706012
PDWI01002921
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
20850
20931
+
Gln
TTG
[ENA]
¢þ
>WENV183714389
PDWI01181284
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1327
1406
+
Gln
TTG
[ENA]
¢þ
>WENV183718155
PDWJ01002627
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1888
1967
+
Gln
TTG
[ENA]
¢þ
>WENV170010827
APMI01030475
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
11
92
+
Gln
TTG
[ENA]
¢þ
>WENV170229548
CEQG01131105
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
968
887
-
Gln
TTG
[ENA]
¢þ
>WENV170733838
LULK01000178
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
20320
20401
+
Gln
TTG
[ENA]
¢þ
>WENV170735173
LULL01000145
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
20152
20233
+
Gln
TTG
[ENA]
¢þ
>WENV170760775
LUMU01000113
[LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m
38786
38867
+
Gln
TTG
[ENA]
¢þ
>C181229768
LT985188
Actinomycetota
Micropruina glycogenica [LT985188]
3777702
3777781
+
Gln
TTG
-
¡û
>C191173820
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
591613
591693
+
Gln
TTG
-
¡û
>C191210835
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
599961
600041
+
Gln
TTG
-
¡û
>C191214550
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
610913
610993
+
Gln
TTG
-
¡û
>W1911615590
PPCV01000002
Actinomycetota
Propioniciclava flava VG341 [PPCV]
279865
279946
+
Gln
TTG
[ENA]
¡û
>W1911768173
QXGH01000044
Actinomycetota
Nocardioides immobilis CCTCC AB 2017083 [QXGH]
54036
54117
+
Gln
TTG
[ENA]
¡û
>W1810201590
POAG01000022
Actinomycetota
Nocardioides sp. 616 [POAG]
122861
122940
+
Gln
TTG
[ENA]
¡û
>W1810539913
QDGZ01000007
Actinomycetota
Nocardioides gansuensis WSJ-1 [QDGZ]
306505
306424
-
Gln
TTG
[ENA]
¡û
>W1810701910
QMFW01000022
Actinomycetota
Janibacter anophelis TNDT5 [QMFW]
37737
37658
-
Gln
TTG
[ENA]
¡û
>W1510060501
CCXJ01000042
Actinomycetota
Nocardioides massiliensis GD13 [CCXJ]
3185
3104
-
Gln
TTG
[ENA]
¡û
>C11114903
AP012204
Actinomycetota
Microlunatus phosphovorus NM-1 [AP012204]
4806091
4806010
-
Gln
TTG
[Ensembl]
¡û
>W1511540066
JZDQ01000153
Actinomycetota
Nocardioides luteus BAFB [JZDQ]
8726
8647
-
Gln
TTG
[ENA]
¡û
>C121002927
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
592714
592795
+
Gln
TTG
[Ensembl]
¡û
>C161082899
CP015079
Actinomycetota
Nocardioides dokdonensis FR1436 [CP015079]
386153
386072
-
Gln
TTG
[Ensembl]
¡û
>W1610027121
AVPJ01000005
Actinomycetota
Knoellia sinensis KCTC 19936 [AVPJ]
16946
17025
+
Gln
TTG
[ENA]
¡û
>W1610050521
BBFY01000284
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
1331
1412
+
Gln
TTG
[ENA]
¡û
>W1610072278
BCUV01000002
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
168818
168897
+
Gln
TTG
[ENA]
¡û
>W1610074505
BCWS01000008
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
65248
65329
+
Pseudo
TTG
[ENA]
¡û
>W1610727274
LMGG01000007
Actinomycetota
Nocardioides sp. Root151 [LMGG]
593491
593572
+
Gln
TTG
[ENA]
¡û
>W1610730075
LMIN01000008
Actinomycetota
Nocardioides sp. Root224 [LMIN]
566886
566965
+
Gln
TTG
[ENA]
¡û
>W1610938243
LUPQ01000052
Actinomycetota
Nocardioides sp. REDSEA-S43_B3 [LUPQ]
38786
38867
+
Gln
TTG
[ENA]
¡û
>W1710023286
AVPJ01000005
Actinomycetota
Knoellia sinensis KCTC 19936 [AVPJ]
16946
17025
+
Gln
TTG
[ENA]
¡û
>W1710046920
BBFY01000284
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BBFY]
1331
1412
+
Gln
TTG
[ENA]
¡û
>W1710069480
BCUV01000002
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
168818
168897
+
Gln
TTG
[ENA]
¡û
>W1710071623
BCWS01000008
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
65248
65329
+
Pseudo
TTG
[ENA]
¡û
>W1710083344
BDJG01000056
Actinomycetota
Nocardioides sp. PD653 [BDJG]
7782
7703
-
Gln
TTG
[ENA]
¡û
>W1710520362
FNFN01000011
Actinomycetota
Nocardioides sp. YR527 [FNFN]
149786
149865
+
Gln
TTG
[ENA]
¡û
>W1710531769
FNPU01000002
Actinomycetota
Tessaracoccus flavus [FNPU]
127852
127931
+
Pseudo
TTG
[ENA]
¡û
>W1710606090
FWXN01000004
Actinomycetota
Janibacter indicus [FWXN]
2010
2091
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
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