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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.122002 (52 seq.)
>W1710860805
LMDE01000001
Actinomycetota
Nocardioides sp. Root122 [LMDE]
855105
855186
+
Gln
TTG
[ENA]
¡û
>W1710866321
LMHJ01000001
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
1672075
1671994
-
Gln
TTG
[ENA]
¡û
>W1710879971
LMSA01000001
Actinomycetota
Knoellia sp. Soil729 [LMSA]
849651
849572
-
Gln
TTG
[ENA]
¡û
>W1710880692
LMSN01000007
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
22923
22844
-
Gln
TTG
[ENA]
¡û
>W1710881069
LMSU01000001
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
1118432
1118353
-
Gln
TTG
[ENA]
¡û
>W1711126777
LUPH01000090
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
7560
7641
+
Gln
TTG
[ENA]
¡û
>W1711127015
LUPN01000165
Actinomycetota
Nocardioides sp. REDSEA-S37_B12 [LUPN]
4530
4611
+
Gln
TTG
[ENA]
¡û
>C171022233
CP013290
Actinomycetota
Janibacter indicus YFY001 [CP013290]
2572827
2572748
-
Gln
TTG
-
¡û
>W131229438
AUGU01000014
Actinomycetota
Nocardioides insulae DSM 17944 [AUGU]
399775
399856
+
Gln
TTG
[ENA]
¡û
>w012506
AAMN01000004
Actinomycetota
Janibacter sp. HTCC2649 [AAMN]
47848
47931
+
Gln
TTG
[ENA]
¡û
>WENV180000018
CZKA01000016
[CZKA] metagenome; liquid mineral medium
21533
21612
+
Gln
TTG
[ENA]
¢þ
>WENV180000062
CZKB01000004
[CZKB] metagenome; liquid mineral medium
358378
358297
-
Gln
TTG
[ENA]
¢þ
>WENV180030976
FTJN01819717
[FTJN] metagenome; soil
407
328
-
Gln
TTG
[ENA]
¢þ
>W141039279
ALWX01000003
Actinomycetota
Janibacter hoylei PVAS-1 [ALWX]
45576
45495
-
Gln
TTG
[ENA]
¡û
>WENV170552181
CXWJ01043350
[CXWJ] wastewater metagenome; activated sludge
2280
2359
+
Gln
TTG
[ENA]
¢þ
>WENV170552211
CXWJ01046732
[CXWJ] wastewater metagenome; activated sludge
5094
5173
+
Gln
TTG
[ENA]
¢þ
>WENV170552341
CXWJ01056975
[CXWJ] wastewater metagenome; activated sludge
1169
1088
-
Gln
TTG
[ENA]
¢þ
>WENV170728660
LULF01000076
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
20330
20411
+
Gln
TTG
[ENA]
¢þ
>WENV170730677
LULH01001369
[LULH] marine metagenome; Red Sea water column Station 169 - depth 100m
4530
4611
+
Gln
TTG
[ENA]
¢þ
>WENV170731567
LULI01001031
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
10313
10394
+
Gln
TTG
[ENA]
¢þ
>WENV170737035
LULN01001289
[LULN] marine metagenome; Red Sea water column Station 149 - depth 100m
8562
8481
-
Gln
TTG
[ENA]
¢þ
>WENV170739319
LULQ01000237
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
7560
7641
+
Gln
TTG
[ENA]
¢þ
>WENV170739886
LULQ01026976
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
407
328
-
Gln
TTG
[ENA]
¢þ
>WENV170741820
LULT01006820
[LULT] marine metagenome; Red Sea water column Station 108 - depth 100m
1882
1801
-
Gln
TTG
[ENA]
¢þ
>WENV170746062
LULZ01006028
[LULZ] marine metagenome; Red Sea water column Station 91 - depth 100m
1433
1352
-
Gln
TTG
[ENA]
¢þ
>WENV170758861
LUMS01000085
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
17877
17958
+
Gln
TTG
[ENA]
¢þ
>C181119554
CP025581
Actinomycetota
Nocardioides houyundeii 78 [CP025581]
864797
864876
+
Gln
TTG
-
¡û
>C191104184
CP033324
Actinomycetota
Nocardioides pantholopis 603 [CP033324]
736295
736374
+
Gln
TTG
-
¡û
>C191132675
CP034929
Actinomycetota
Nocardioides yefusunii HY056 [CP034929]
676696
676775
+
Gln
TTG
-
¡û
>C191147697
CP036164
Actinomycetota
Janibacter limosus P3-3-X1 [CP036164]
407460
407539
+
Gln
TTG
-
¡û
>W141564341
JIAR01000024
Actinomycetota
Nocardioides sp. URHA0020 [JIAR]
35599
35678
+
Gln
TTG
[ENA]
¡û
>W141564518
JIAV01000015
Actinomycetota
Nocardioides sp. URHA0032 [JIAV]
46422
46343
-
Gln
TTG
[ENA]
¡û
>W1810487179
QAYJ01000001
Actinomycetota
Nocardioides sp. CF204 [QAYJ]
2427951
2427870
-
Gln
TTG
[ENA]
¡û
>W1810626184
QHKX01000002
Actinomycetota
Nocardioides solisilvae Ka25 [QHKX]
902654
902575
-
Gln
TTG
[ENA]
¡û
>W1810626277
QHKZ01000003
Actinomycetota
Nocardioides daejeonensis MJ31 [QHKZ]
287652
287571
-
Gln
TTG
[ENA]
¡û
>SRA1016584
SRR027355.58354
Investigation of prokaryote diversity in the sub-seafloor biosphere by 16S rRNA gene tag (V6) sequencing (SRP001218)
164
245
+
Gln
TTG
[SRA]
>W1610068497
BCRJ01000076
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
5379
5460
+
Gln
TTG
[ENA]
¡û
>W1610069622
BCSQ01000020
Actinomycetota
Janibacter anophelis NBRC 107843 [BCSQ]
13148
13069
-
Gln
TTG
[ENA]
¡û
>W1610069722
BCSS01000019
Actinomycetota
Janibacter limosus NBRC 16128 [BCSS]
33851
33770
-
Gln
TTG
[ENA]
¡û
>W1610078165
BDAR01000010
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BDAR]
28625
28704
+
Gln
TTG
[ENA]
¡û
>W1610723151
LMDE01000001
Actinomycetota
Nocardioides sp. Root122 [LMDE]
855105
855186
+
Gln
TTG
[ENA]
¡û
>W1610728667
LMHJ01000001
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
1672075
1671994
-
Gln
TTG
[ENA]
¡û
>W1610742317
LMSA01000001
Actinomycetota
Knoellia sp. Soil729 [LMSA]
849651
849572
-
Gln
TTG
[ENA]
¡û
>W1610743038
LMSN01000007
Actinomycetota
Nocardioides sp. Soil777 [LMSN]
22923
22844
-
Gln
TTG
[ENA]
¡û
>W1610743415
LMSU01000001
Actinomycetota
Nocardioides sp. Soil805 [LMSU]
1118432
1118353
-
Gln
TTG
[ENA]
¡û
>W1610937891
LUPH01000090
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
7560
7641
+
Gln
TTG
[ENA]
¡û
>W1610938129
LUPN01000165
Actinomycetota
Nocardioides sp. REDSEA-S37_B12 [LUPN]
4530
4611
+
Gln
TTG
[ENA]
¡û
>W1710065870
BCRJ01000076
Actinomycetota
Nocardioides jensenii JCM 1364 = NBRC 14755 [BCRJ]
5379
5460
+
Gln
TTG
[ENA]
¡û
>W1710066995
BCSQ01000020
Actinomycetota
Janibacter anophelis NBRC 107843 [BCSQ]
13148
13069
-
Gln
TTG
[ENA]
¡û
>W1710067095
BCSS01000019
Actinomycetota
Janibacter limosus NBRC 16128 [BCSS]
33851
33770
-
Gln
TTG
[ENA]
¡û
>W1710076724
BDAR01000010
Actinomycetota
Janibacter terrae NBRC 107854 = JCM 12887 [BDAR]
28625
28704
+
Gln
TTG
[ENA]
¡û
>W1710512545
FMZM01000009
Actinomycetota
Nocardioides lianchengensis [FMZM]
84861
84780
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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