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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.122208 (18 seq.)
>W131224583
AUCX01000014
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
2383
2297
-
Leu
GAG
[ENA]
¡û
>W131224584
AUCX01000014
Thermodesulfobacteriota
Maridesulfovibrio bastinii DSM 16055 [AUCX]
470
384
-
Leu
GAG
[ENA]
¡û
>WENV180589497
OCOR01086390
[OCOR] marine metagenome; ENVO:00002042
10
96
+
Leu
GAG
[ENA]
¢þ
>WENV170418951
CEUM01083224
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
257
171
-
Leu
GAG
[ENA]
¢þ
>WENV170437797
CEUU01068020
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
175
261
+
Leu
GAG
[ENA]
¢þ
>WENV170440341
CEUV01090466
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
173
259
+
Leu
GAG
[ENA]
¢þ
>WENV170469736
CEVF01138400
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
874
960
+
Leu
GAG
[ENA]
¢þ
>WENV170896329
MDTD01093894
[MDTD] marine metagenome; seawater
37041
37127
+
Leu
GAG
[ENA]
¢þ
>WENV170896330
MDTD01093894
[MDTD] marine metagenome; seawater
37253
37339
+
Leu
GAG
[ENA]
¢þ
>C181227017
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
440849
440763
-
Leu
GAG
-
¡û
>C181227018
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
440637
440551
-
Leu
GAG
-
¡û
>W10111359
ADDI01000002
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
87925
87839
-
Leu
GAG
[ENA]
¡û
>C11106879
CP002431
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [CP002431]
1736751
1736665
-
Leu
GAG
[Ensembl]
¡û
>W11114302
ADDI01000002
Thermodesulfobacteriota
Pseudodesulfovibrio aespoeensis Aspo-2 [ADDI]
87925
87839
-
Leu
GAG
[ENA]
¡û
>W11149100
AEUJ01000001
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [AEUJ]
496737
496823
+
Leu
GAG
[ENA]
¡û
>C121008968
CP003220
Thermodesulfobacteriota
Pseudodesulfovibrio mercurii ND132 [CP003220]
496737
496823
+
Leu
GAG
[Ensembl]
¡û
>C161068275
CP014206
Thermodesulfobacteriota
Pseudodesulfovibrio indicus J2 [CP014206]
2679598
2679512
-
Leu
GAG
[Ensembl]
¡û
>C131017911
FO203427
Thermodesulfobacteriota
Pseudodesulfovibrio piezophilus C1TLV30 type strain: C1TLV30 [FO203427]
475981
476067
+
Leu
GAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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