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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.122389 (28 seq.)
>W1710868111
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
2108854
2108770
-
Leu
TAG
[ENA]
¡û
>W1711261698
LYWY01000040
Alphaproteobacteria
Croceicoccus pelagius [LYWY]
187982
187898
-
Leu
TAG
[ENA]
¡û
>W1711386361
MEFG01000017
Alphaproteobacteria
Sphingomonas sp. SCN 67-18 [MEFG]
102137
102053
-
Leu
TAG
[ENA]
¡û
>W1711506410
MKWJ01000023
Alphaproteobacteria
Sphingomonas sp. 67-41 [MKWJ]
279252
279168
-
Leu
TAG
[ENA]
¡û
>W131214352
ATTZ01000127
Alphaproteobacteria
Sphingomonas sp. JGI 0001002-C18 [ATTZ]
2547
2631
+
Leu
TAG
[ENA]
¡û
>WENV180355066
OBNG01002083
[OBNG] sediment metagenome; sediment
1953
1869
-
Leu
TAG
[ENA]
¡û
>WENV180355260
OBNH01000107
[OBNH] sediment metagenome; sediment
35201
35117
-
Leu
TAG
[ENA]
¡û
>WENV181234516
OFEU01000247
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
5211
5127
-
Leu
TAG
[ENA]
¡û
>WENV183739748
PJUF01000005
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
595250
595166
-
Leu
TAG
[ENA]
¡û
>WENV170176079
CEOS01036333
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
9215
9131
-
Leu
TAG
[ENA]
¡û
>WENV170277995
CERQ01043095
[CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
19374
19290
-
Leu
TAG
[ENA]
¡û
>WENV170555433
CXWL01000586
[CXWL] groundwater metagenome; biofilm material
25957
25873
-
Leu
TAG
[ENA]
¡û
>WENV170555695
CXWL01001801
[CXWL] groundwater metagenome; biofilm material
4113
4197
+
Leu
TAG
[ENA]
¡û
>W2010560265
JAASQV010000001
Alphaproteobacteria
Sphingomonas leidyi DSM 4733 [JAASQV]
750435
750519
+
Leu
TAG
[ENA]
¡û
>W2010674378
JACCFG010000001
Alphaproteobacteria
Sphingomonas sp. R-74633 [JACCFG]
325215
325299
+
Leu
TAG
[ENA]
¡û
>W2011320756
QWLV01000006
Alphaproteobacteria
Sphingomonas sp. ZDH117 [QWLV]
174962
175046
+
Leu
TAG
[ENA]
¡û
>W2012041280
VIRF01000092
Alphaproteobacteria
Novosphingobium sp. BW1 [VIRF]
8219
8303
+
Leu
TAG
[ENA]
¡û
>C201182072
CP046535
Alphaproteobacteria
Sphingomonas sp. LMO-1 [CP046535]
1648543
1648459
-
Leu
TAG
-
¡û
>C211128180
CP060052
Alphaproteobacteria
Croceicoccus marinus OT19 [CP060052]
2945331
2945247
-
Leu
TAG
-
¡û
>W2110704941
JAIVLF010000003
Alphaproteobacteria
Novosphingobium profundi EaN21-2 [JAIVLF]
91543
91459
-
Leu
TAG
[ENA]
¡û
>C231536493
CP110679
Alphaproteobacteria
Sphingomonas sp. S6-11 [CP110679]
177222
177306
+
Leu
TAG
-
¡û
>C241142398
CP050265
Alphaproteobacteria
Erythrobacter sp. [CP050265]
2047797
2047713
-
Leu
TAG
-
¡û
>C241328245
CP136594
Alphaproteobacteria
Parasphingorhabdus sp. SCSIO 66989 [CP136594]
1469818
1469902
+
Leu
TAG
-
¡û
>W1610071309
BCTZ01000001
Alphaproteobacteria
Sphingomonas soli NBRC 100801 [BCTZ]
273487
273571
+
Leu
TAG
[ENA]
¡û
>W1610730457
LMIV01000001
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
2108854
2108770
-
Leu
TAG
[ENA]
¡û
>WENV077380
AAFX01028800
Soil microbial communities from Minnesota Farm
644
558
-
Leu
TAG
[ENA]
>W1611023673
LYWY01000040
Alphaproteobacteria
Croceicoccus pelagius [LYWY]
187982
187898
-
Leu
TAG
[ENA]
¡û
>W1710068674
BCTZ01000001
Alphaproteobacteria
Sphingomonas soli NBRC 100801 [BCTZ]
273487
273571
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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