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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.122738 (47 seq.)
>C171108559
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
1231420
1231504
+
Leu
TAG
-
¡û
>C171108563
CP020472
Gammaproteobacteria
Shewanella japonica KCTC 22435 [CP020472]
1231914
1231998
+
Leu
TAG
-
¡û
>C019824
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
3077916
3077832
-
Leu
TAG
[Ensembl]
¡û
>C020919
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
939758
939842
+
Leu
TAG
[Ensembl]
¡û
>C022705
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
3457384
3457300
-
Leu
TAG
[Ensembl]
¡û
>C022709
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
3456847
3456763
-
Leu
TAG
[Ensembl]
¡û
>C022711
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
3456588
3456504
-
Leu
TAG
[Ensembl]
¡û
>w007653
AAIU01000006
Gammaproteobacteria
Shewanella denitrificans OS-217 [AAIU]
35734
35648
-
Leu
TAG
[ENA]
¡û
>WENV170023603
BCQL01000214
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
6269
6353
+
Leu
TAG
[ENA]
¡û
>WENV170023607
BCQL01000214
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
6765
6849
+
Leu
TAG
[ENA]
¡û
>W141802016
JPEO01000018
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
36035
35951
-
Leu
TAG
[ENA]
¡û
>W2010786049
LTBI01000042
Gammaproteobacteria
Shewanella algae CLS1 [LTBI]
33107
33191
+
Leu
TAG
[ENA]
¡û
>W2010787320
LUKM01000019
Gammaproteobacteria
Shewanella algae JFC2 [LUKM]
42399
42315
-
Leu
TAG
[ENA]
¡û
>W2010789041
LVCX01000028
Gammaproteobacteria
Shewanella algae JFC3 [LVCX]
5429
5345
-
Leu
TAG
[ENA]
¡û
>W2010789206
LVCZ01000032
Gammaproteobacteria
Shewanella algae RC [LVCZ]
5688
5604
-
Leu
TAG
[ENA]
¡û
>W2010789562
LVDE01000001
Gammaproteobacteria
Shewanella algae CLS5 [LVDE]
3888
3804
-
Leu
TAG
[ENA]
¡û
>W2010790872
LVDT01000019
Gammaproteobacteria
Shewanella algae SYT2 [LVDT]
29890
29806
-
Leu
TAG
[ENA]
¡û
>W2011284606
QPQU01000010
Gammaproteobacteria
Shewanella pacifica KCTC 12235 [QPQU]
38204
38120
-
Leu
TAG
[ENA]
¡û
>W2011284610
QPQU01000010
Gammaproteobacteria
Shewanella pacifica KCTC 12235 [QPQU]
37709
37625
-
Leu
TAG
[ENA]
¡û
>W2011621381
SLWF01000020
Gammaproteobacteria
Shewanella fodinae 74A [SLWF]
13949
13865
-
Leu
TAG
[ENA]
¡û
>W2110036045
BMPZ01000002
Gammaproteobacteria
Shewanella gelidii JCM 30804 [BMPZ]
29100
29184
+
Leu
TAG
[ENA]
¡û
>W2110036049
BMPZ01000002
Gammaproteobacteria
Shewanella gelidii JCM 30804 [BMPZ]
29513
29597
+
Leu
TAG
[ENA]
¡û
>W2110036051
BMPZ01000002
Gammaproteobacteria
Shewanella gelidii JCM 30804 [BMPZ]
29801
29885
+
Leu
TAG
[ENA]
¡û
>W2110048243
BMXW01000013
Gammaproteobacteria
Shewanella fodinae KCTC 22506 [BMXW]
78421
78505
+
Leu
TAG
[ENA]
¡û
>C201201532
CP047422
Gammaproteobacteria
Shewanella algae 18064-CSB-B-B [CP047422]
2888877
2888961
+
Leu
TAG
-
¡û
>C211023134
AP024612
Gammaproteobacteria
Shewanella algae TUM17378 [AP024612]
3653149
3653065
-
Leu
TAG
-
¡û
>C211023437
AP024615
Gammaproteobacteria
Shewanella algae TUM17383 [AP024615]
3666226
3666142
-
Leu
TAG
-
¡û
>C211023537
AP024616
Gammaproteobacteria
Shewanella algae TUM17384 [AP024616]
3631237
3631153
-
Leu
TAG
-
¡û
>C211023609
AP024617
Gammaproteobacteria
Shewanella algae TUM17386 [AP024617]
4613595
4613679
+
Leu
TAG
-
¡û
>C211245514
CP068227
Gammaproteobacteria
Shewanella algae A59 [CP068227]
3558524
3558440
-
Leu
TAG
-
¡û
>C211245825
CP068230
Gammaproteobacteria
Shewanella algae CECT 5071 [CP068230]
3672395
3672311
-
Leu
TAG
-
¡û
>C211257425
CP069213
Gammaproteobacteria
Shewanella litorisediminis SMK1-12 [CP069213]
3041023
3040939
-
Leu
TAG
-
¡û
>C211291892
CP071501
Gammaproteobacteria
Shewanella sp. FJAT-53720 [CP071501]
2974328
2974244
-
Leu
TAG
-
¡û
>C211291984
CP071502
Gammaproteobacteria
Shewanella sp. FJAT-52962 [CP071502]
3054543
3054459
-
Leu
TAG
-
¡û
>C211378357
CP080418
Gammaproteobacteria
Shewanella sp. FJAT-53681 [CP080418]
3497891
3497807
-
Leu
TAG
-
¡û
>C211378361
CP080418
Gammaproteobacteria
Shewanella sp. FJAT-53681 [CP080418]
3497354
3497270
-
Leu
TAG
-
¡û
>C211378363
CP080418
Gammaproteobacteria
Shewanella sp. FJAT-53681 [CP080418]
3497095
3497011
-
Leu
TAG
-
¡û
>C211378550
CP080420
Gammaproteobacteria
Shewanella sp. FJAT-53764 [CP080420]
3464868
3464784
-
Leu
TAG
-
¡û
>C211378554
CP080420
Gammaproteobacteria
Shewanella sp. FJAT-53764 [CP080420]
3464331
3464247
-
Leu
TAG
-
¡û
>C211378556
CP080420
Gammaproteobacteria
Shewanella sp. FJAT-53764 [CP080420]
3464072
3463988
-
Leu
TAG
-
¡û
>C241056547
CP041329
Gammaproteobacteria
Shewanella sp. Scap07 [CP041329]
3633627
3633543
-
Leu
TAG
-
¡û
>C241056551
CP041329
Gammaproteobacteria
Shewanella sp. Scap07 [CP041329]
3633149
3633065
-
Leu
TAG
-
¡û
>C241056553
CP041329
Gammaproteobacteria
Shewanella sp. Scap07 [CP041329]
3632896
3632812
-
Leu
TAG
-
¡û
>C241056554
CP041329
Gammaproteobacteria
Shewanella sp. Scap07 [CP041329]
3632712
3632628
-
Leu
TAG
-
¡û
>C241288172
CP129401
Gammaproteobacteria
Shewanella algae MCCC 1A11468 [CP129401]
3622360
3622276
-
Leu
TAG
-
¡û
>W1610077874
BCZT01000047
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
3339
3255
-
Leu
TAG
[ENA]
¡û
>W1710075432
BCZT01000047
Gammaproteobacteria
Shewanella algae JCM 21037 = NBRC 103173 [BCZT]
3339
3255
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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