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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.12285 (62 seq.)
>W131249840
CAUA01000075
Betaproteobacteria
Nitrosospira lacus APG3 [CAUA]
96745
96653
-
Ser
GCT
[ENA]
¡û
>C014754
AL954747
Betaproteobacteria
Nitrosomonas europaea ATCC 19718 [AL954747]
2314560
2314468
-
Ser
GCT
[Ensembl]
¡û
>C015168
CP000103
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 [CP000103]
2233075
2232983
-
Ser
GCT
[Ensembl]
¡û
>WENV180296541
OBJA01000797
[OBJA] soil metagenome; sediment, water from around vicinity
18053
18145
+
Ser
GCT
[ENA]
¢þ
>w002418
AABB02000001
Betaproteobacteria
Nitrosomonas europaea [AABB]
2314567
2314473
-
Ser
GCT
[ENA]
¡û
>WENV181168490
OEIU01403485
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
179
87
-
Ser
GCT
[ENA]
¢þ
>WENV181170693
OEIV010075810
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
134
42
-
Ser
GCT
[ENA]
¢þ
>WENV170551806
CXWJ01024011
[CXWJ] wastewater metagenome; activated sludge
2371
2463
+
Ser
GCT
[ENA]
¢þ
>WENV170557953
CXWL01044267
[CXWL] groundwater metagenome; biofilm material
104
196
+
Ser
GCT
[ENA]
¢þ
>WENV170576228
FRDC01000183
[FRDC] freshwater metagenome; water
18196
18288
+
Ser
GCT
[ENA]
¢þ
>WENV170577102
FRDC01003257
[FRDC] freshwater metagenome; water
33554
33462
-
Ser
GCT
[ENA]
¢þ
>C181049309
CP021106
Betaproteobacteria
Nitrosospira lacus APG3 [CP021106]
1586561
1586653
+
Ser
GCT
-
¡û
>W141558435
JHVX01000009
Betaproteobacteria
Nitrosospira briensis C-128 [JHVX]
113289
113197
-
Ser
GCT
[ENA]
¡û
>W141565163
JIBI01000021
Betaproteobacteria
Nitrosomonas cryotolerans ATCC 49181 [JIBI]
2394
2486
+
Ser
GCT
[ENA]
¡û
>W1910228547
FNVK01000004
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 Nl13 [FNVK]
76609
76701
+
Ser
GCT
[ENA]
¡û
>W1910338829
FSRO01000001
Betaproteobacteria
Nitrosomonas cryotolerans ATCC 49181 [FSRO]
1847047
1847139
+
Ser
GCT
[ENA]
¡û
>W1911496924
OCMZ01000002
Betaproteobacteria
Nitrosovibrio sp. Nv4 [OCMZ]
943311
943219
-
Ser
GCT
[ENA]
¡û
>W1810463602
PZZR01000004
Betaproteobacteria
Nitrosospira sp. Nsp22 [PZZR]
113312
113220
-
Ser
GCT
[ENA]
¡û
>W1810463657
PZZS01000019
Betaproteobacteria
Nitrosomonas nitrosa Nm91 [PZZS]
44015
44107
+
Ser
GCT
[ENA]
¡û
>W1810463697
PZZT01000043
Betaproteobacteria
Nitrosomonas sp. Nm141 [PZZT]
6965
6873
-
Ser
GCT
[ENA]
¡û
>W1810464099
QAAC01000022
Betaproteobacteria
Nitrosospira sp. Nsp6 [QAAC]
754
662
-
Ser
GCT
[ENA]
¡û
>W1810476836
QAOI01000003
Betaproteobacteria
Nitrosomonas oligotropha Nm49 [QAOI]
1080
988
-
Ser
GCT
[ENA]
¡û
>W1810476954
QAOK01000017
Betaproteobacteria
Nitrosospira multiformis Nl12 [QAOK]
231
139
-
Ser
GCT
[ENA]
¡û
>W1810477125
QAOO01000009
Betaproteobacteria
Nitrosomonas nitrosa Nm90 [QAOO]
18282
18190
-
Ser
GCT
[ENA]
¡û
>W1810477286
QAOR01000021
Betaproteobacteria
Nitrosospira sp. Nsp5 [QAOR]
754
662
-
Ser
GCT
[ENA]
¡û
>W1810503411
QBKC01000003
Betaproteobacteria
Nitrosospira sp. Nsp37 [QBKC]
350752
350844
+
Ser
GCT
[ENA]
¡û
>W1810696185
QLTB01000008
Betaproteobacteria
Nitrosospira multiformis Nl15 [QLTB]
24984
24892
-
Ser
GCT
[ENA]
¡û
>W1810696216
QLTC01000006
Betaproteobacteria
Nitrosospira multiformis Nsp16 [QLTC]
77196
77288
+
Ser
GCT
[ENA]
¡û
>W1810696263
QLTD01000002
Betaproteobacteria
Nitrosospira multiformis Nl8 [QLTD]
433110
433202
+
Ser
GCT
[ENA]
¡û
>C151082871
CP011451
Betaproteobacteria
Nitrosomonas communis Nm2 [CP011451]
2937476
2937384
-
Ser
GCT
[Ensembl]
¡û
>C151094454
CP012371
Betaproteobacteria
Nitrosospira briensis C-128 [CP012371]
2787960
2788052
+
Ser
GCT
-
¡û
>W1610574678
JZQZ01000009
Betaproteobacteria
Nitrosomonas europaea [JZQZ]
93
1
-
Ser
GCT
[ENA]
¡û
>W1710505953
FMUF01000004
Betaproteobacteria
Nitrosospira sp. Nsp1 [FMUF]
78019
78111
+
Ser
GCT
[ENA]
¡û
>W1710507294
FMVD01000010
Betaproteobacteria
Nitrosospira sp. Nsp13 [FMVD]
30374
30466
+
Ser
GCT
[ENA]
¡û
>W1710507919
FMVQ01000001
Betaproteobacteria
Nitrosospira sp. Nl5 [FMVQ]
29832
29924
+
Ser
GCT
[ENA]
¡û
>W1710509134
FMWY01000001
Betaproteobacteria
Nitrosospira sp. Nsp18 [FMWY]
121125
121217
+
Ser
GCT
[ENA]
¡û
>W1710517393
FNDH01000003
Betaproteobacteria
Nitrosomonas sp. Nm132 [FNDH]
132684
132592
-
Ser
GCT
[ENA]
¡û
>W1710527354
FNKY01000001
Betaproteobacteria
Nitrosospira multiformis [FNKY]
2914893
2914801
-
Ser
GCT
[ENA]
¡û
>W1710528550
FNNH01000057
Betaproteobacteria
Nitrosomonas communis [FNNH]
2752
2660
-
Ser
GCT
[ENA]
¡û
>W1710529372
FNNX01000023
Betaproteobacteria
Nitrosomonas europaea [FNNX]
25002
25094
+
Ser
GCT
[ENA]
¡û
>W1710529708
FNOE01000005
Betaproteobacteria
Nitrosomonas oligotropha [FNOE]
142495
142587
+
Ser
GCT
[ENA]
¡û
>W1710530690
FNOY01000019
Betaproteobacteria
Nitrosomonas halophila [FNOY]
10345
10437
+
Ser
GCT
[ENA]
¡û
>W1710531595
FNPQ01000070
Betaproteobacteria
Nitrosomonas sp. Nm58 [FNPQ]
4735
4827
+
Ser
GCT
[ENA]
¡û
>W1710532585
FNQL01000003
Betaproteobacteria
Nitrosospira multiformis [FNQL]
88686
88778
+
Ser
GCT
[ENA]
¡û
>W1710545207
FOBH01000010
Betaproteobacteria
Nitrosovibrio tenuis [FOBH]
3651
3559
-
Ser
GCT
[ENA]
¡û
>W1710547222
FOCT01000005
Betaproteobacteria
Nitrosospira multiformis [FOCT]
222748
222840
+
Ser
GCT
[ENA]
¡û
>W1710548188
FODO01000005
Betaproteobacteria
Nitrosomonas oligotropha [FODO]
12480
12388
-
Ser
GCT
[ENA]
¡û
>W1710548572
FODX01000001
Betaproteobacteria
Nitrosovibrio sp. Nv6 [FODX]
999661
999569
-
Ser
GCT
[ENA]
¡û
>W1710553103
FOHI01000001
Betaproteobacteria
Nitrosospira multiformis [FOHI]
433613
433521
-
Ser
GCT
[ENA]
¡û
>W1710554049
FOID01000024
Betaproteobacteria
Nitrosomonas europaea [FOID]
25002
25094
+
Ser
GCT
[ENA]
¡û
>W1710560170
FONE01000015
Betaproteobacteria
Nitrosomonas sp. Nm166 [FONE]
54459
54551
+
Ser
GCT
[ENA]
¡û
>W1710565318
FORD01000037
Betaproteobacteria
Nitrosomonas sp. Nm34 [FORD]
4717
4625
-
Ser
GCT
[ENA]
¡û
>W1710569039
FOUB01000015
Betaproteobacteria
Nitrosomonas communis [FOUB]
55557
55649
+
Ser
GCT
[ENA]
¡û
>W1710569225
FOUF01000020
Betaproteobacteria
Nitrosomonas nitrosa [FOUF]
8410
8318
-
Ser
GCT
[ENA]
¡û
>W1710570786
FOVJ01000005
Betaproteobacteria
Nitrosospira briensis [FOVJ]
99518
99610
+
Ser
GCT
[ENA]
¡û
>W1710571472
FOVY01000007
Betaproteobacteria
Nitrosospira briensis [FOVY]
99540
99632
+
Ser
GCT
[ENA]
¡û
>W1710573503
FOXN01000021
Betaproteobacteria
Nitrosomonas cryotolerans [FOXN]
2242
2334
+
Ser
GCT
[ENA]
¡û
>W1710578282
FPBL01000010
Betaproteobacteria
Nitrosomonas eutropha [FPBL]
9763
9671
-
Ser
GCT
[ENA]
¡û
>W1710578954
FPBZ01000002
Betaproteobacteria
Nitrosospira multiformis [FPBZ]
247529
247437
-
Ser
GCT
[ENA]
¡û
>W1710591588
FRBV01000001
Betaproteobacteria
Nitrosospira sp. Nsp11 [FRBV]
108408
108316
-
Ser
GCT
[ENA]
¡û
>W1710600410
FUWK01000024
Betaproteobacteria
Nitrosomonas europaea [FUWK]
20618
20526
-
Ser
GCT
[ENA]
¡û
>W1710691913
JZQZ01000009
Betaproteobacteria
Nitrosomonas europaea [JZQZ]
93
1
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK