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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.123475 (29 seq.)
>A171000130
AP012489
Thermoproteota
Aeropyrum camini SY1 = JCM 12091 [AP012489]
1467575
1467497
-
Gly
TCC
-
¡û
>A171000559
CP001400
Thermoproteota
Sulfolobus islandicus M.14.25 [CP001400]
1588082
1588005
-
Gly
TCC
-
¡û
>A171000586
CP001401
Thermoproteota
Sulfolobus islandicus M.16.27 [CP001401]
1712497
1712420
-
Gly
TCC
-
¡û
>A171000613
CP001402
Thermoproteota
Sulfolobus islandicus M.16.4 [CP001402]
1614210
1614133
-
Gly
TCC
-
¡û
>A171000640
CP001403
Thermoproteota
Sulfolobus islandicus Y.G.57.14 [CP001403]
1645996
1645919
-
Gly
TCC
-
¡û
>A171000656
CP001404
Thermoproteota
Sulfolobus islandicus Y.N.15.51 [CP001404]
980549
980626
+
Gly
TCC
-
¡û
>A171001044
CP001800
Thermoproteota
Saccharolobus solfataricus [CP001800]
1268587
1268664
+
Gly
TCC
-
¡û
>A171001932
CP002425
Thermoproteota
Sulfolobus islandicus REY15A [CP002425]
1493747
1493670
-
Gly
TCC
-
¡û
>A171001958
CP002426
Thermoproteota
Sulfolobus islandicus HVE10/4 [CP002426]
1638233
1638156
-
Gly
TCC
-
¡û
>A171003453
CP003928
Thermoproteota
Sulfolobus islandicus LAL14/1 [CP003928]
1479222
1479145
-
Gly
TCC
-
¡û
>A171005939
CP011055
Thermoproteota
Saccharolobus solfataricus SARC-B [CP011055]
1326762
1326839
+
Gly
TCC
-
¡û
>A171005966
CP011056
Thermoproteota
Saccharolobus solfataricus SARC-C [CP011056]
1326760
1326837
+
Gly
TCC
-
¡û
>A171005993
CP011057
Thermoproteota
Saccharolobus solfataricus SULA [CP011057]
1326778
1326855
+
Gly
TCC
-
¡û
>A171006782
CP017006
Thermoproteota
Sulfolobus sp. A20 [CP017006]
706616
706540
-
Gly
TCC
-
¡û
>A171007583
LT549890
Thermoproteota
Saccharolobus solfataricus P1 [LT549890]
339891
339968
+
Gly
TCC
-
¡û
>WENV180299699
OBJC01091840
[OBJC] metagenome; water
218
140
-
Gly
TCC
[ENA]
¢þ
>WENV181229281
OFEJ01002952
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
3893
3815
-
Gly
TCC
[ENA]
¢þ
>WENV181229327
OFEJ01004756
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
2900
2978
+
Gly
CCC
[ENA]
¢þ
>W1610001091
ACQS01000010
Thermoproteota
Saccharolobus solfataricus Feb-98 [ACQS]
62482
62405
-
Gly
TCC
[ENA]
¡û
>W1610001505
ACUK01000025
Thermoproteota
Saccharolobus solfataricus Feb-98 [ACUK]
61701
61624
-
Gly
TCC
[ENA]
¡û
>W1610004558
AHJK01000001
Thermoproteota
Sulfolobus islandicus M.16.2 [AHJK]
1643764
1643687
-
Gly
TCC
[ENA]
¡û
>W1610004616
AHJM01000003
Thermoproteota
Sulfolobus islandicus M.16.13 [AHJM]
762958
762881
-
Gly
TCC
[ENA]
¡û
>W1610004645
AHJN01000003
Thermoproteota
Sulfolobus islandicus M.16.22 [AHJN]
668547
668470
-
Gly
TCC
[ENA]
¡û
>W1610004673
AHJO01000001
Thermoproteota
Sulfolobus islandicus M.16.23 [AHJO]
1626430
1626353
-
Gly
TCC
[ENA]
¡û
>W1610004703
AHJP01000004
Thermoproteota
Sulfolobus islandicus M.16.30 [AHJP]
734147
734070
-
Gly
TCC
[ENA]
¡û
>W1610004731
AHJQ01000001
Thermoproteota
Sulfolobus islandicus M.16.40 [AHJQ]
1645787
1645710
-
Gly
TCC
[ENA]
¡û
>W1610004760
AHJR01000001
Thermoproteota
Sulfolobus islandicus M.16.43 [AHJR]
1606713
1606636
-
Gly
TCC
[ENA]
¡û
>W1610004790
AHJS01000002
Thermoproteota
Sulfolobus islandicus M.16.46 [AHJS]
796951
796874
-
Gly
TCC
[ENA]
¡û
>W1610004818
AHJT01000001
Thermoproteota
Sulfolobus islandicus M.16.47 [AHJT]
1656675
1656598
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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