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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.124578 (97 seq.)
>W1710869728
LMJY01000012
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
77009
76926
-
Leu
CAA
[ENA]
¡û
>W1710927038
LOEX01000127
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
40703
40620
-
Leu
CAA
[ENA]
¡û
>W1711051708
LRSE01000007
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
148679
148596
-
Leu
CAA
[ENA]
¡û
>W1711072925
LSIA01000315
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
14415
14498
+
Leu
CAA
[ENA]
¡û
>W1711253285
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
1224907
1224990
+
Leu
CAA
[ENA]
¡û
>W1711261749
LYWZ01000027
Alphaproteobacteria
Croceicoccus mobilis [LYWZ]
189465
189382
-
Leu
CAA
[ENA]
¡û
>W1711503921
MKUB01000090
Alphaproteobacteria
Sphingomonadales bacterium 63-6 [MKUB]
7494
7577
+
Leu
CAA
[ENA]
¡û
>W1711705025
MSQB01000004
Alphaproteobacteria
Novosphingobium panipatense [MSQB]
174626
174543
-
Leu
CAA
[ENA]
¡û
>C171056595
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
1188843
1188760
-
Leu
CAA
-
¡û
>C171096153
CP019602
Alphaproteobacteria
Croceicoccus marinus E4A9 [CP019602]
1224907
1224990
+
Leu
CAA
-
¡û
>C014718
CP000248
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [CP000248]
2075626
2075543
-
Leu
CAA
[Ensembl]
¡û
>WENV180695635
OCZS013746955
[OCZS] soil metagenome; soil
120
37
-
Leu
CAA
[ENA]
¡û
>W141077967
ATHL01000100
Alphaproteobacteria
Novosphingobium lindaniclasticum LE124 [ATHL]
80030
79947
-
Leu
CAA
[ENA]
¡û
>WENV181168788
OEIU01785208
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
94
176
+
Leu
CAA
[ENA]
¡û
>WENV181192933
OEPS011227696
[OEPS] soil metagenome; soil
170
87
-
Leu
CAA
[ENA]
¡û
>WENV181222980
OFDC01000918
[OFDC] hot springs metagenome; Water
16657
16574
-
Leu
CAA
[ENA]
¡û
>WENV181416896
OGCL01176914
[OGCL] hot springs metagenome; Hot spring water
145
62
-
Leu
CAA
[ENA]
¡û
>WENV183726625
PJTO01000033
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
187653
187570
-
Leu
CAA
[ENA]
¡û
>WENV183733164
PJTY01000162
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
39309
39392
+
Leu
CAA
[ENA]
¡û
>WENV183738200
PJUD01116892
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
373
456
+
Leu
CAA
[ENA]
¡û
>WENV183739135
PJUE01002095
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
2064
1981
-
Leu
CAA
[ENA]
¡û
>WENV170175870
CEOS01015804
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3474
3391
-
Leu
CAA
[ENA]
¡û
>WENV170278077
CERQ01050671
[CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1104
1021
-
Leu
CAA
[ENA]
¡û
>WENV170646267
JQGG01099816
[JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each
241
158
-
Leu
CAA
[ENA]
¡û
>WENV170669314
LAHR01115991
[LAHR] activated sludge metagenome; Sample C-3; Sludge from acetogenic chamber (third chamber) of Anaerobic Baffled Reactor over
449
366
-
Leu
CAA
[ENA]
¡û
>W141484932
JFYZ01000003
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
166802
166885
+
Leu
CAA
[ENA]
¡û
>C181192046
CP030352
Alphaproteobacteria
Novosphingobium sp. P6W [CP030352, CP030353]
1619835
1619918
+
Leu
CAA
-
¡û
>C191057047
CP028347
Alphaproteobacteria
Novosphingobium sp. THN1 [CP028347]
2664684
2664767
+
Leu
CAA
-
¡û
>W09100322
AAAV03000004
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [AAAV]
399560
399643
+
Leu
CAA
[ENA]
¡û
>W1910651507
LYMM01000029
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
251390
251307
-
Leu
CAA
[ENA]
¡û
>W1910822170
MWMO01000015
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
21295
21378
+
Leu
CAA
[ENA]
¡û
>W1810121204
PHUF01000002
Alphaproteobacteria
Novosphingobium kunmingense CGMCC 1.12274 [PHUF]
346463
346546
+
Leu
CAA
[ENA]
¡û
>W1810195699
PKRT01000001
Alphaproteobacteria
Novosphingobium sp. TH158 [PKRT]
654902
654819
-
Leu
CAA
[ENA]
¡û
>W1810239611
PPSM01000021
Alphaproteobacteria
Novosphingobium sp. HII-3 [PPSM]
31052
31135
+
Leu
CAA
[ENA]
¡û
>W1810597615
QGHL01000007
Alphaproteobacteria
Novosphingobium meiothermophilum SYSU G00007 [QGHL]
517418
517335
-
Leu
CAA
[ENA]
¡û
>C151048369
CP009291
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [CP009291]
3940815
3940898
+
Leu
CAA
[Ensembl]
¡û
>C151086191
CP011770
Alphaproteobacteria
Croceicoccus naphthovorans PQ-2 [CP011770]
1319716
1319799
+
Leu
CAA
[Ensembl]
¡û
>W2010137844
BLJH01000006
Alphaproteobacteria
Novosphingobium sp. TCA1 [BLJH]
84981
84898
-
Leu
CAA
[ENA]
¡û
>W2010320959
CACSJO010000001
Alphaproteobacteria
Novosphingobium sp. 18050 [CACSJO]
271975
271892
-
Leu
CAA
[ENA]
¡û
>W2010321419
CACSJU010000026
Alphaproteobacteria
Novosphingobium sp. 18052 [CACSJU]
38262
38179
-
Leu
CAA
[ENA]
¡û
>W2010675503
JACCGB010000001
Alphaproteobacteria
Novosphingobium sp. B11G3A [JACCGB]
929884
929967
+
Leu
CAA
[ENA]
¡û
>W2010723894
JACICY010000005
Alphaproteobacteria
Novosphingobium hassiacum DSM 14552 [JACICY]
210669
210752
+
Leu
CAA
[ENA]
¡û
>W2010725808
JACIEL010000011
Alphaproteobacteria
Croceicoccus naphthovorans DSM 102796 [JACIEL]
106011
105928
-
Leu
CAA
[ENA]
¡û
>W2010796742
LYMM01000029
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
251390
251307
-
Leu
CAA
[ENA]
¡û
>W2010918592
MWMO01000015
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
21295
21378
+
Leu
CAA
[ENA]
¡û
>W2011498779
RXOL01000001
Alphaproteobacteria
Croceicoccus sp. GM-16 [RXOL]
726400
726317
-
Leu
CAA
[ENA]
¡û
>W2011619505
SLVB01000001
Alphaproteobacteria
Novosphingobium sp. PhB165 [SLVB]
992916
992833
-
Leu
CAA
[ENA]
¡û
>W2011619561
SLVC01000004
Alphaproteobacteria
Novosphingobium sp. ST904 [SLVC]
266098
266181
+
Leu
CAA
[ENA]
¡û
>W2011629436
SMBO01000001
Alphaproteobacteria
Novosphingobium sp. PhB57 [SMBO]
644369
644452
+
Leu
CAA
[ENA]
¡û
>W2011657963
SODQ01000001
Alphaproteobacteria
Novosphingobium sp. PhB55 [SODQ]
235659
235742
+
Leu
CAA
[ENA]
¡û
>W2012047636
VIVX01000001
Alphaproteobacteria
Novosphingobium barchaimii 1192 [VIVX]
187626
187543
-
Leu
CAA
[ENA]
¡û
>W2012426116
WRPO01000001
Alphaproteobacteria
Novosphingobium sp. M24A2M [WRPO]
401898
401815
-
Leu
CAA
[ENA]
¡û
>W2012468415
WVTD01000002
Alphaproteobacteria
Novosphingobium sp. FGD1 [WVTD]
199261
199178
-
Leu
CAA
[ENA]
¡û
>W2110016792
BLTI01000008
Alphaproteobacteria
Novosphingobium sp. PY1 [BLTI]
253509
253426
-
Leu
CAA
[ENA]
¡û
>W2110025187
BMHK01000010
Alphaproteobacteria
Novosphingobium endophyticum CGMCC 1.15095 [BMHK]
37880
37797
-
Leu
CAA
[ENA]
¡û
>W2110026763
BMIP01000002
Alphaproteobacteria
Croceicoccus mobilis CGMCC 1.15360 [BMIP]
118387
118470
+
Leu
CAA
[ENA]
¡û
>W2110030295
BMLK01000031
Alphaproteobacteria
Novosphingobium indicum CGMCC 1.6784 [BMLK]
21244
21327
+
Leu
CAA
[ENA]
¡û
>W2110190517
JABWCU010000009
Alphaproteobacteria
Novosphingobium profundi F72 [JABWCU]
191132
191049
-
Leu
CAA
[ENA]
¡û
>W2110195997
JABXWS010000038
Alphaproteobacteria
Novosphingobium sp. HR1a [JABXWS]
45562
45479
-
Leu
CAA
[ENA]
¡û
>W2110399639
JADZGI010000001
Alphaproteobacteria
Novosphingobium sp. YJ-S2-02 [JADZGI]
1844363
1844446
+
Leu
CAA
[ENA]
¡û
>W2110591792
JAHCBF010000007
Alphaproteobacteria
Croceicoccus sp. 1NDH52 [JAHCBF]
93816
93733
-
Leu
CAA
[ENA]
¡û
>W2110635399
JAHOOZ010000001
Alphaproteobacteria
Novosphingobium sp. G106 [JAHOOZ]
1532715
1532632
-
Leu
CAA
[ENA]
¡û
>C201110597
CP042345
Alphaproteobacteria
Novosphingobium ginsenosidimutans FW-6 [CP042345]
2422476
2422559
+
Leu
CAA
-
¡û
>C211031790
CP021247
Alphaproteobacteria
Novosphingobium sp. KA1 [CP021247, CP021248]
3038331
3038414
+
Leu
CAA
-
¡û
>C211100458
CP054856
Alphaproteobacteria
Novosphingobium sp. 502str22 [CP054856]
173798
173881
+
Leu
CAA
-
¡û
>C211128191
CP060052
Alphaproteobacteria
Croceicoccus marinus OT19 [CP060052]
2039697
2039614
-
Leu
CAA
-
¡û
>C211137719
CP060718
Alphaproteobacteria
Sphingomonas lutea KCTC 23642 [CP060718]
1729771
1729688
-
Leu
CAA
-
¡û
>W2110704958
JAIVLF010000004
Alphaproteobacteria
Novosphingobium profundi EaN21-2 [JAIVLF]
255658
255575
-
Leu
CAA
[ENA]
¡û
>C211235806
CP067087
Alphaproteobacteria
Croceicoccus sp. YJ47 [CP067087]
3233853
3233770
-
Leu
CAA
-
¡û
>W1510012862
BBNP01000062
Alphaproteobacteria
Novosphingobium sp. MBES04 [BBNP]
99428
99345
-
Leu
CAA
[ENA]
¡û
>W1510024390
CCBH010000158
Alphaproteobacteria
Novosphingobium sp. KN65.2 [CCBH]
60533
60616
+
Leu
CAA
[ENA]
¡û
>C231032190
CP022707
Alphaproteobacteria
Novosphingobium sp. 9 [CP022707, CP022708]
2459484
2459401
-
Leu
CAA
-
¡û
>C231259894
CP089301
Alphaproteobacteria
Novosphingobium sp. Sx8-5 NBRC [CP089301]
3436770
3436853
+
Leu
CAA
-
¡û
>C231620101
CP119316
Alphaproteobacteria
Sphingomonadaceae bacterium [CP119316]
519709
519626
-
Leu
CAA
-
¡û
>C241282398
CP128492
Alphaproteobacteria
Novosphingobium resinovorum HR1a [CP128491, CP128492]
1881338
1881255
-
Leu
CAA
-
¡û
>C241368982
CP141944
Alphaproteobacteria
Novosphingobium sp. RL4 [CP141944]
2514773
2514690
-
Leu
CAA
-
¡û
>W2310022533
BSFC01000039
Alphaproteobacteria
Novosphingobium resinovorum VKM B-1172 [BSFC]
46672
46589
-
Leu
CAA
[ENA]
¡û
>C11116173
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
2323009
2323092
+
Leu
CAA
[Ensembl]
¡û
>W1510757012
JACU01000002
Alphaproteobacteria
Novosphingobium barchaimii LL02 [JACU]
142013
142096
+
Leu
CAA
[ENA]
¡û
>W1511398015
JTDI01000003
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
416855
416938
+
Leu
CAA
[ENA]
¡û
>W1511519417
JXZE01000006
Alphaproteobacteria
Novosphingobium sp. P6W [JXZE]
97142
97059
-
Leu
CAA
[ENA]
¡û
>W121009677
AGFM01000005
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [AGFM]
41877
41794
-
Leu
CAA
[ENA]
¡û
>W121081069
AKFJ01000017
Alphaproteobacteria
Novosphingobium sp. Rr 2-17 [AKFJ]
65006
65089
+
Leu
CAA
[ENA]
¡û
>W121086702
AKKE01000006
Alphaproteobacteria
Novosphingobium sp. AP12 [AKKE]
54107
54024
-
Leu
CAA
[ENA]
¡û
>W121119218
ALVC01000046
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
8058
7975
-
Leu
CAA
[ENA]
¡û
>W1610550596
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
1248505
1248422
-
Leu
CAA
[ENA]
¡û
>W1610614821
LGJH01000152
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
20244
20161
-
Leu
CAA
[ENA]
¡û
>W1610732074
LMJY01000012
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
77009
76926
-
Leu
CAA
[ENA]
¡û
>W1610784580
LOEX01000127
Alphaproteobacteria
Sphingomonadales bacterium BRH_c42 [LOEX]
40703
40620
-
Leu
CAA
[ENA]
¡û
>W1610892837
LRSE01000007
Alphaproteobacteria
Croceicoccus bisphenolivorans H4 [LRSE]
148679
148596
-
Leu
CAA
[ENA]
¡û
>W1610912185
LSIA01000315
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
14415
14498
+
Leu
CAA
[ENA]
¡û
>W1611017822
LYPP01000001
Alphaproteobacteria
Croceicoccus marinus [LYPP]
1224907
1224990
+
Leu
CAA
[ENA]
¡û
>W1611023724
LYWZ01000027
Alphaproteobacteria
Croceicoccus mobilis [LYWZ]
189465
189382
-
Leu
CAA
[ENA]
¡û
>W1710507997
FMVR01000006
Alphaproteobacteria
Novosphingobium aromaticivorans stygium [FMVR]
261187
261270
+
Leu
CAA
[ENA]
¡û
>W1710604552
FVZE01000001
Alphaproteobacteria
Novosphingobium mathurense [FVZE]
639129
639212
+
Leu
CAA
[ENA]
¡û
>W1710660359
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
1248505
1248422
-
Leu
CAA
[ENA]
¡û
>W1710736067
LGJH01000152
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
20244
20161
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK