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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.124584 (26 seq.)
>C171057859
CP017150
Actinomycetota
Brevibacterium aurantiacum SMQ-1335 [CP017150]
3074124
3074206
+
Leu
TAG
-
¡û
>w005574
AAGP01000049
Actinomycetota
Brevibacterium aurantiacum BL2 [AAGP]
25109
25025
-
Leu
TAG
[ENA]
¡û
>WENV183635711
OOIW01006157
[OOIW] human gut metagenome; Skin biopsy
95
177
+
Leu
TAG
[ENA]
¢þ
>C191031862
CP025330
Actinomycetota
Brevibacterium aurantiacum SMQ-1417 [CP025330]
3106315
3106397
+
Leu
TAG
-
¡û
>C191031910
CP025331
Actinomycetota
Brevibacterium aurantiacum SMQ-1418 [CP025331]
2928345
2928427
+
Leu
TAG
-
¡û
>C191031958
CP025332
Actinomycetota
Brevibacterium aurantiacum SMQ-1421 [CP025332]
2796737
2796819
+
Leu
TAG
-
¡û
>C191032053
CP025334
Actinomycetota
Brevibacterium aurantiacum SMQ-1420 [CP025334]
3085059
3085141
+
Leu
TAG
-
¡û
>W1910181654
BJME01000033
Actinomycetota
Brevibacterium aurantiacum NBRC 12171 [BJME]
13319
13401
+
Leu
TAG
[ENA]
¡û
>W1910500094
FXYZ01000006
Actinomycetota
Brevibacterium aurantiacum [FXYZ]
263692
263610
-
Leu
TAG
[ENA]
¡û
>W1910500209
FXZB01000036
Actinomycetota
Brevibacterium aurantiacum ATCC 9175 [FXZB]
12403
12321
-
Leu
TAG
[ENA]
¡û
>W1910500287
FXZD01000004
Actinomycetota
Brevibacterium antiquum CNRZ 918 [FXZD]
31411
31329
-
Leu
TAG
[ENA]
¡û
>W1910500317
FXZE01000002
Actinomycetota
Brevibacterium antiquum P10 [FXZE]
216474
216392
-
Leu
TAG
[ENA]
¡û
>W1910500419
FXZG01000004
Actinomycetota
Brevibacterium aurantiacum CNRZ 920 [FXZG]
132377
132295
-
Leu
TAG
[ENA]
¡û
>W1910500470
FXZH01000011
Actinomycetota
Brevibacterium sp. 239c [FXZH]
19400
19482
+
Leu
TAG
[ENA]
¡û
>W1910500542
FXZI01000025
Actinomycetota
Brevibacterium aurantiacum [FXZI]
17081
17163
+
Leu
TAG
[ENA]
¡û
>W1911203157
NRGO01000027
Actinomycetota
Brevibacterium aurantiacum 900_6 [NRGO]
92438
92520
+
Leu
TAG
[ENA]
¡û
>W1911203174
NRGP01000004
Actinomycetota
Brevibacterium aurantiacum 947_7 [NRGP]
106801
106719
-
Leu
TAG
[ENA]
¡û
>W1911203243
NRGQ01000022
Actinomycetota
Brevibacterium aurantiacum 962_8 [NRGQ]
104967
105049
+
Leu
TAG
[ENA]
¡û
>W1911203583
NRGX01000001
Actinomycetota
Brevibacterium aurantiacum JB5 [NRGX]
566891
566973
+
Leu
TAG
[ENA]
¡û
>W1911203794
NRHA01000007
Actinomycetota
Brevibacterium aurantiacum 738_8 [NRHA]
279218
279300
+
Leu
TAG
[ENA]
¡û
>W1911203862
NRHB01000011
Actinomycetota
Brevibacterium aurantiacum 341_13 [NRHB]
109804
109722
-
Leu
TAG
[ENA]
¡û
>W1810721374
QNRZ01000001
Actinomycetota
Brevibacterium sanguinis 2b_TX [QNRZ]
292675
292757
+
Leu
TAG
[ENA]
¡û
>W1810721471
QNSB01000001
Actinomycetota
Brevibacterium celere 3b_TX [QNSB]
284349
284267
-
Leu
TAG
[ENA]
¡û
>W1810756567
QPGC01000080
Actinomycetota
Brevibacterium aurantiacum 862_7 [QPGC]
4824
4742
-
Leu
TAG
[ENA]
¡û
>W1810756602
QPGD01000013
Actinomycetota
Brevibacterium aurantiacum 876_7 [QPGD]
279414
279496
+
Leu
TAG
[ENA]
¡û
>W1810756642
QPGE01000008
Actinomycetota
Brevibacterium aurantiacum 908_7 [QPGE]
107684
107766
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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