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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.124611 (104 seq.)
>W1710996778
LQBR01000009
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
13498
13581
+
Tyr
GTA
[ENA]
¡û
>W1711029567
LRFG01000009
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
13498
13581
+
Tyr
GTA
[ENA]
¡û
>W1711047350
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
2388724
2388641
-
Tyr
GTA
[ENA]
¡û
>W1711268632
LZDE01000223
Gammaproteobacteria
Microbulbifer mangrovi [LZDE]
9041
9124
+
Tyr
GTA
[ENA]
¡û
>W1711678534
MRUG01000040
Gammaproteobacteria
Alteromonadales bacterium BS08 [MRUG]
346727
346644
-
Tyr
GTA
[ENA]
¡û
>C171097773
CP019650
Gammaproteobacteria
Microbulbifer agarilyticus GP101 [CP019650]
3567068
3566985
-
Tyr
GTA
-
¡û
>C171103086
CP020038
Gammaproteobacteria
Agarilytica rhodophyticola 017 [CP020038]
5238672
5238589
-
Tyr
GTA
-
¡û
>W131174996
ARIX01000006
Gammaproteobacteria
Gilvimarinus chinensis DSM 19667 [ARIX]
1045
962
-
Tyr
GTA
[ENA]
¡û
>W131159080
AQUT01000006
Gammaproteobacteria
Teredinibacter turnerae T8602 [AQUT]
192407
192324
-
Tyr
GTA
[ENA]
¡û
>W131164121
ARAH01000001
Gammaproteobacteria
Teredinibacter turnerae T7902 [ARAH]
156002
155919
-
Tyr
GTA
[ENA]
¡û
>W131166982
ARCX01000050
Gammaproteobacteria
Teredinibacter turnerae T0609 [ARCX]
199754
199837
+
Tyr
GTA
[ENA]
¡û
>W131179293
ARMG01000026
Gammaproteobacteria
Teredinibacter turnerae T8402 [ARMG]
195034
194951
-
Tyr
GTA
[ENA]
¡û
>W131179332
ARMH01000056
Gammaproteobacteria
Teredinibacter turnerae T8412 [ARMH]
91680
91763
+
Tyr
GTA
[ENA]
¡û
>W131219180
ATYI01000012
Gammaproteobacteria
Teredinibacter turnerae T8415 [ATYI]
194975
194892
-
Tyr
GTA
[ENA]
¡û
>W131228582
AUGB01000002
Gammaproteobacteria
Teredinibacter turnerae T8513 [AUGB]
192599
192516
-
Tyr
GTA
[ENA]
¡û
>W131230674
AUHU01000020
Gammaproteobacteria
Marinimicrobium agarilyticum DSM 16975 [AUHU]
1775
1692
-
Tyr
GTA
[ENA]
¡û
>C020868
CP000282
Gammaproteobacteria
Saccharophagus degradans 2-40 [CP000282]
1183359
1183442
+
Tyr
GTA
[Ensembl]
¡û
>WENV181324801
OFLH01008661
[OFLH] marine metagenome; sea ice
598
515
-
Tyr
GTA
[ENA]
¡û
>W141135601
AWEP01000009
Gammaproteobacteria
Marinimicrobium sp. LS-A18 [AWEP]
8497
8580
+
Tyr
GTA
[ENA]
¡û
>WENV183616858
OOEE01004593
[OOEE] marine metagenome; sea ice
576
493
-
Tyr
GTA
[ENA]
¡û
>WENV183617519
OOEG01004036
[OOEG] marine metagenome; sea ice
576
493
-
Tyr
GTA
[ENA]
¡û
>WENV183621463
OOFU01001799
[OOFU] marine metagenome; sea ice
806
889
+
Tyr
GTA
[ENA]
¡û
>WENV183624403
OOGD01006407
[OOGD] marine metagenome; sea ice
652
735
+
Tyr
GTA
[ENA]
¡û
>WENV183624592
OOGD01056548
[OOGD] marine metagenome; sea ice
304
221
-
Tyr
GTA
[ENA]
¡û
>WENV183624693
OOGE01001090
[OOGE] marine metagenome; sea ice
2072
2155
+
Tyr
GTA
[ENA]
¡û
>WENV183630793
OOGU01002553
[OOGU] marine metagenome; sea ice
2445
2362
-
Tyr
GTA
[ENA]
¡û
>WENV170151623
CEOD01013929
[CEOD] marine metagenome genome assembly TARA_036_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
161
78
-
Tyr
GTA
[ENA]
¡û
>W141425811
JELR01000005
Gammaproteobacteria
Microbulbifer sp. HZ11 [JELR]
270894
270977
+
Tyr
GTA
[ENA]
¡û
>WENV170538403
CEWR01077616
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4057
4140
+
Tyr
GTA
[ENA]
¡û
>WENV170661192
JXWU01126620
[JXWU] soil metagenome; rice field; organic control Plot
197
114
-
Tyr
GTA
[ENA]
¡û
>WENV170824835
MDSY01083157
[MDSY] marine metagenome; seawater
3973
4056
+
Tyr
GTA
[ENA]
¡û
>WENV170896832
MDTD01101688
[MDTD] marine metagenome; seawater
124
41
-
Tyr
GTA
[ENA]
¡û
>WENV170964169
MRWG01004316
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
721
638
-
Tyr
GTA
[ENA]
¡û
>W09100589
AABI03000022
Gammaproteobacteria
Saccharophagus degradans 2-40 [AABI]
6093
6176
+
Tyr
GTA
[ENA]
¡û
>W141565061
JIBG01000008
Gammaproteobacteria
Teredinibacter turnerae 1133Y.S.0a.04 [JIBG]
201818
201901
+
Tyr
GTA
[ENA]
¡û
>W1910989448
NKQJ01000015
Gammaproteobacteria
Agaribacterium haliotis feces2 [NKQJ]
59284
59201
-
Tyr
GTA
[ENA]
¡û
>W1810270700
PREV01000026
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
881236
881153
-
Tyr
GTA
[ENA]
¡û
>W1810604693
QGMQ01000012
Gammaproteobacteria
Marinimicrobium alkaliphilum SW121 [QGMQ]
75842
75759
-
Tyr
GTA
[ENA]
¡û
>W2010168617
CABFPG010000003
Gammaproteobacteria
Teredinibacter sp. ISS155 [CABFPG]
65479
65396
-
Tyr
GTA
[ENA]
¡û
>W2010529686
JAAOIX010000002
Gammaproteobacteria
Pseudomaricurvus alcaniphilus MEBiC06469 [JAAOIX]
1333
1250
-
Tyr
GTA
[ENA]
¡û
>W2010532601
JAAONY010000005
Gammaproteobacteria
Pseudoteredinibacter isoporae LMG 25246 [JAAONY]
2957
3040
+
Tyr
GTA
[ENA]
¡û
>W2010536184
JAAQPJ010000009
Gammaproteobacteria
Pseudoteredinibacter isoporae DSM 22368 [JAAQPJ]
2977
3060
+
Tyr
GTA
[ENA]
¡û
>W2010702889
JACHHR010000003
Gammaproteobacteria
Microbulbifer hydrolyticus DSM 11525 [JACHHR]
644648
644565
-
Tyr
GTA
[ENA]
¡û
>W2010702997
JACHHT010000011
Gammaproteobacteria
Pseudoteredinibacter isoporae DSM 22368 [JACHHT]
578
495
-
Tyr
GTA
[ENA]
¡û
>W2010715904
JACHWZ010000041
Gammaproteobacteria
Microbulbifer rhizosphaerae CECT 8799 [JACHWZ]
582
499
-
Tyr
GTA
[ENA]
¡û
>W2010743167
JACJUV010000001
Gammaproteobacteria
Teredinibacter franksiae Bsc2 [JACJUV]
1434287
1434204
-
Tyr
GTA
[ENA]
¡û
>W2010901638
MRUH01000019
Gammaproteobacteria
Teredinibacter waterburyi Bs02 [MRUH]
167831
167748
-
Tyr
GTA
[ENA]
¡û
>W2010994620
NKQJ01000015
Gammaproteobacteria
Agaribacterium haliotis feces2 [NKQJ]
59284
59201
-
Tyr
GTA
[ENA]
¡û
>W2011373845
RBIO01000001
Gammaproteobacteria
Alteromonadaceae bacterium 2052S.S.stab0a.01 [RBIO]
2983430
2983347
-
Tyr
GTA
[ENA]
¡û
>W2011412818
REFJ01000006
Gammaproteobacteria
Umboniibacter marinipuniceus DSM 25080 [REFJ]
82939
82856
-
Tyr
GTA
[ENA]
¡û
>W2011441765
RJUK01000004
Gammaproteobacteria
Marinimicrobium koreense DSM 16974 [RJUK]
123005
122922
-
Tyr
GTA
[ENA]
¡û
>W2011961582
VANI01000020
Gammaproteobacteria
Microbulbifer sp. HB161719 [VANI]
803
720
-
Tyr
GTA
[ENA]
¡û
>W2012034931
VHSG01000035
Gammaproteobacteria
Cellvibrionaceae bacterium R142 [VHSG]
31149
31232
+
Tyr
GTA
[ENA]
¡û
>W2012042439
VISH01000002
Gammaproteobacteria
Alteromonadaceae bacterium 2753L.S.0a.02 [VISH]
1312932
1313015
+
Tyr
GTA
[ENA]
¡û
>W2110293614
JACZCR010000061
Gammaproteobacteria
Microbulbifer hainanensis NBU-8HK146 [JACZCR]
10561
10644
+
Tyr
GTA
[ENA]
¡û
>W2110295205
JACZFR010000073
Gammaproteobacteria
Microbulbifer taiwanensis LMG 26125 [JACZFR]
9611
9694
+
Tyr
GTA
[ENA]
¡û
>W2110423305
JAEKJR010000002
Gammaproteobacteria
Microbulbifer salipaludis SN0-2 [JAEKJR]
169238
169321
+
Tyr
GTA
[ENA]
¡û
>W2110611618
JAHKPP010000008
Gammaproteobacteria
Saccharophagus degradans E3M17 [JAHKPP]
16284
16201
-
Tyr
GTA
[ENA]
¡û
>W2110655099
JAHVKG010000006
Gammaproteobacteria
Microbulbifer agarilyticus DP3N7-3 [JAHVKG]
160062
159979
-
Tyr
GTA
[ENA]
¡û
>W2110655611
JAHVKO010000006
Gammaproteobacteria
Microbulbifer agarilyticus DP4N21-6 [JAHVKO]
90169
90252
+
Tyr
GTA
[ENA]
¡û
>C201049253
CP031728
Gammaproteobacteria
Cellvibrio sp. KY-GH-1 [CP031728]
4573688
4573771
+
Tyr
GTA
-
¡û
>C201193080
CP046948
Gammaproteobacteria
Microbulbifer sp. SH-1 [CP046948]
4360608
4360691
+
Tyr
GTA
-
¡û
>C201202209
CP047491
Gammaproteobacteria
Microbulbifer hydrolyticus IRE-31 [CP047491]
3467353
3467270
-
Tyr
GTA
-
¡û
>W2110700771
JAIUZG010000007
Gammaproteobacteria
Microbulbifer agarilyticus DP5N0-1 [JAIUZG]
42474
42391
-
Tyr
GTA
[ENA]
¡û
>W2110701056
JAIUZM010000005
Gammaproteobacteria
Microbulbifer agarilyticus DP3N0-2 [JAIUZM]
174062
174145
+
Tyr
GTA
[ENA]
¡û
>C211128746
CP060084
Gammaproteobacteria
Teredinibacter haidensis Bs08 [CP060084]
190317
190400
+
Tyr
GTA
-
¡û
>C211129077
CP060092
Gammaproteobacteria
Teredinibacter purpureus Bs12 [CP060092]
4458554
4458471
-
Tyr
GTA
-
¡û
>W2110703408
JAIVKJ010000001
Gammaproteobacteria
Microbulbifer elongatus SaN0-4 [JAIVKJ]
202059
202142
+
Tyr
GTA
[ENA]
¡û
>W2110703496
JAIVKK010000008
Gammaproteobacteria
Microbulbifer aggregans SaN0-8 [JAIVKK]
136368
136285
-
Tyr
GTA
[ENA]
¡û
>C231003429
AP023086
Gammaproteobacteria
Marinagarivorans sp. GE09 [AP023086]
446994
447077
+
Tyr
GTA
-
¡û
>W2110740274
JDFX01000015
Gammaproteobacteria
Alteromonadaceae bacterium Bs31 [JDFX]
232852
232769
-
Tyr
GTA
[ENA]
¡û
>C231244999
CP087715
Gammaproteobacteria
Microbulbifer celer KCTC 12973 [CP087715]
2859193
2859110
-
Tyr
GTA
-
¡û
>C231254140
CP088953
Gammaproteobacteria
Microbulbifer elongatus DSM 6810 [CP088953]
1494054
1494137
+
Tyr
GTA
-
¡û
>C231266713
CP089928
Gammaproteobacteria
Microbulbifer sp. YPW16 [CP089928]
3076497
3076580
+
Tyr
GTA
-
¡û
>C231425872
CP100350
Gammaproteobacteria
Gilvimarinus sp. DA14 [CP100350]
3026001
3026084
+
Tyr
GTA
-
¡û
>C231534795
CP110629
Gammaproteobacteria
Marinimicrobium koreense C6131 [CP110629]
177823
177906
+
Tyr
GTA
-
¡û
>C241230028
CP116898
Gammaproteobacteria
Microbulbifer sp. RZ01 [CP116898]
2983502
2983419
-
Tyr
GTA
-
¡û
>C241230074
CP116899
Gammaproteobacteria
Microbulbifer sp. TB1203 [CP116899]
2981985
2981902
-
Tyr
GTA
-
¡û
>C241234544
CP118605
Gammaproteobacteria
Microbulbifer bruguierae H12 [CP118605]
1935392
1935309
-
Tyr
GTA
-
¡û
>C241249910
CP123764
Gammaproteobacteria
Saccharophagus degradans FZY0027 [CP123764]
4137393
4137310
-
Tyr
GTA
-
¡û
>C241293246
CP130317
Gammaproteobacteria
Microbulbifer thermotolerans HB226069 [CP130317]
567997
568080
+
Tyr
GTA
-
¡û
>C241338313
CP137555
Gammaproteobacteria
Microbulbifer pacificus SPO729 [CP137555]
1442131
1442048
-
Tyr
GTA
-
¡û
>W2310026166
BSPD01000068
Gammaproteobacteria
Marinibactrum halimedae NBRC 110095 [BSPD]
3885
3968
+
Tyr
GTA
[ENA]
¡û
>C10113865
CP001614
Gammaproteobacteria
Teredinibacter turnerae T7901 [CP001614]
925518
925601
+
Tyr
GTA
[Ensembl]
¡û
>W1510865156
JDFY01000001
Gammaproteobacteria
Teredinibacter purpureus Bs12 [JDFY]
4464046
4463963
-
Tyr
GTA
[ENA]
¡û
>W1511502013
JXCJ01000001
Gammaproteobacteria
Gilvimarinus agarilyticus JEA5 [JXCJ]
1147646
1147729
+
Tyr
GTA
[ENA]
¡û
>W1511573588
LANB01000001
Gammaproteobacteria
Cellvibrionaceae bacterium 1162T.S.0a.05 1162T.S.0a.05 [LANB]
2465538
2465621
+
Tyr
GTA
[ENA]
¡û
>W1511573654
LANC01000013
Gammaproteobacteria
Teredinibacter turnerae 991H.S.0a.06 [LANC]
195244
195161
-
Tyr
GTA
[ENA]
¡û
>W11150188
AEVK01000059
Gammaproteobacteria
gamma proteobacterium IMCC1989 [AEVK]
695
612
-
Tyr
GTA
[ENA]
¡û
>W1511681169
LFIJ01000003
Gammaproteobacteria
Gilvimarinus polysaccharolyticus YN3 [LFIJ]
125822
125739
-
Tyr
GTA
[ENA]
¡û
>W11170292
AFPJ01000004
Gammaproteobacteria
Microbulbifer agarilyticus S89 [AFPJ]
134691
134774
+
Tyr
GTA
[ENA]
¡û
>C161078676
CP014864
Gammaproteobacteria
Microbulbifer thermotolerans DAU221 [CP014864]
574651
574734
+
Tyr
GTA
[Ensembl]
¡û
>WENV069146
AACY023754529
Marine microbial communities from Global Ocean Sampling (GOS)
99
16
-
Tyr
GTA
[ENA]
>W1610610036
LFYV01000004
Gammaproteobacteria
Marinagarivorans algicola [LFYV]
112502
112419
-
Tyr
GTA
[ENA]
¡û
>W1610610319
LGAK01000004
Gammaproteobacteria
Marinagarivorans algicola [LGAK]
97760
97677
-
Tyr
GTA
[ENA]
¡û
>W1610851435
LQBR01000009
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
13498
13581
+
Tyr
GTA
[ENA]
¡û
>W1610877835
LRFG01000009
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
13498
13581
+
Tyr
GTA
[ENA]
¡û
>W1610888479
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
2388724
2388641
-
Tyr
GTA
[ENA]
¡û
>W1710520098
FNFH01000011
Gammaproteobacteria
Microbulbifer yueqingensis [FNFH]
941
858
-
Tyr
GTA
[ENA]
¡û
>W1710557218
FOKT01000010
Gammaproteobacteria
Microbulbifer thermotolerans [FOKT]
10192
10275
+
Tyr
GTA
[ENA]
¡û
>W1710583732
FQVA01000008
Gammaproteobacteria
Microbulbifer donghaiensis [FQVA]
10430
10513
+
Tyr
GTA
[ENA]
¡û
>W1710607816
FXAI01000007
Gammaproteobacteria
Alteromonadaceae bacterium Bs31 [FXAI]
232852
232769
-
Tyr
GTA
[ENA]
¡û
>W1710731381
LFYV01000004
Gammaproteobacteria
Marinagarivorans algicola [LFYV]
112502
112419
-
Tyr
GTA
[ENA]
¡û
>W1710731825
LGAK01000004
Gammaproteobacteria
Marinagarivorans algicola [LGAK]
97760
97677
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK