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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.124622 (42 seq.)
>W1711711775
MTBG01000002
Alphaproteobacteria
Pseudoruegeria sp. SK021 [MTBG]
68793
68710
-
Leu
CAA
[ENA]
¡û
>C171035280
CP015039
Alphaproteobacteria
Rhodovulum sp. P5 [CP015039]
65805
65888
+
Leu
CAA
-
¡û
>WENV181234005
OFET01000717
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
14736
14819
+
Leu
CAA
[ENA]
¡û
>WENV181234784
OFEU01008531
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
441
358
-
Leu
CAA
[ENA]
¡û
>WENV182576282
OJFX01008401
[OJFX] seawater metagenome; Sea water
1721
1638
-
Leu
CAA
[ENA]
¡û
>WENV182584046
OJHF01004785
[OJHF] seawater metagenome; Sea water
2216
2299
+
Leu
CAA
[ENA]
¡û
>W141284624
JALZ01000012
Alphaproteobacteria
Roseivivax halodurans JCM 10272 [JALZ]
91191
91108
-
Leu
CAA
[ENA]
¡û
>W141290273
JASG01000004
Alphaproteobacteria
Sulfitobacter guttiformis KCTC 32187 [JASG]
1209152
1209235
+
Leu
CAA
[ENA]
¡û
>WENV170266040
CERE01034463
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3663
3580
-
Leu
CAA
[ENA]
¡û
>WENV170303979
CESI01008355
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
97
180
+
Leu
CAA
[ENA]
¡û
>WENV170477545
CEVJ01084229
[CEVJ] marine metagenome genome assembly TARA_146_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
793
710
-
Leu
CAA
[ENA]
¡û
>WENV170482918
CEVM01070603
[CEVM] marine metagenome genome assembly TARA_145_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
276
193
-
Leu
CAA
[ENA]
¡û
>WENV170570175
FLMP01451365
[FLMP] seawater metagenome; seawater
326
409
+
Leu
CAA
[ENA]
¡û
>WENV170948412
MEHZ011185179
[MEHZ] marine metagenome; marine surface water
331
414
+
Leu
CAA
[ENA]
¡û
>WENV170948439
MEHZ011193622
[MEHZ] marine metagenome; marine surface water
234
317
+
Leu
CAA
[ENA]
¡û
>C181052341
CP021404
Alphaproteobacteria
Pacificitalea manganoxidans DY25 [CP021404]
2144957
2144874
-
Leu
CAA
-
¡û
>C181123359
CP025804
Alphaproteobacteria
Sulfitobacter sp. SK012 [CP025804]
2698922
2698839
-
Leu
CAA
-
¡û
>W1910442790
FWFN01000002
Alphaproteobacteria
Pseudooceanicola marinus CECT 7751 [FWFN]
24724
24641
-
Leu
CAA
[ENA]
¡û
>W1910443042
FWFS01000010
Alphaproteobacteria
Aquimixticola soesokkakensis CECT 8620 [FWFS]
134724
134641
-
Leu
CAA
[ENA]
¡û
>W1911081203
NMZM01000001
Alphaproteobacteria
Oceaniglobus indicus 1-19b [NMZM]
143980
144063
+
Leu
CAA
[ENA]
¡û
>W1911749934
QWJJ01000026
Alphaproteobacteria
Pseudooceanicola sp. CY03 [QWJJ]
4539
4622
+
Leu
CAA
[ENA]
¡û
>W1810471777
QAGK01000001
Alphaproteobacteria
Oceaniglobus ichthyenteri YLY08 [QAGK]
73665
73582
-
Leu
CAA
[ENA]
¡û
>W1810532442
QCYH01000001
Alphaproteobacteria
Pelagivirga sediminicola BH-SD19 [QCYH]
78394
78477
+
Leu
CAA
[ENA]
¡û
>W1810584010
QEYE01000001
Alphaproteobacteria
Maritimibacter sp. 55A14 [QEYE]
51718
51635
-
Leu
CAA
[ENA]
¡û
>W1810603232
QGKU01000031
Alphaproteobacteria
Meridianimarinicoccus roseus TG-679 [QGKU]
82544
82461
-
Leu
CAA
[ENA]
¡û
>W1810606071
QGNX01000005
Alphaproteobacteria
Oceanibium sediminis O448 [QGNX]
111687
111770
+
Leu
CAA
[ENA]
¡û
>W1810761148
QPLK01000007
Alphaproteobacteria
Rhodovulum sp. 12E13 [QPLK]
84299
84382
+
Leu
CAA
[ENA]
¡û
>W2010406406
FWFS01000010
Alphaproteobacteria
Aquimixticola soesokkakensis CECT 8620 [FWFS]
134724
134641
-
Leu
CAA
[ENA]
¡û
>W2010489519
JAAJBD010000001
Alphaproteobacteria
Boseongicola sp. TAW-CT132 [JAAJBD]
977794
977877
+
Leu
CAA
[ENA]
¡û
>W2011005894
NMZM01000001
Alphaproteobacteria
Oceaniglobus indicus 1-19b [NMZM]
143980
144063
+
Leu
CAA
[ENA]
¡û
>W2011319179
QWJJ01000026
Alphaproteobacteria
Pseudooceanicola sp. CY03 [QWJJ]
4539
4622
+
Leu
CAA
[ENA]
¡û
>W2011492163
RWGU01000035
Alphaproteobacteria
Rhodovulum robiginosum DSM 12329 [RWGU]
5349
5266
-
Leu
CAA
[ENA]
¡û
>W2011642272
SMZO01000019
Alphaproteobacteria
Rhodobacteraceae bacterium SM1902 [SMZO]
38872
38955
+
Leu
CAA
[ENA]
¡û
>W2011701805
SWBV01000002
Alphaproteobacteria
Puniceibacterium sp. HSS470 [SWBV]
11669
11586
-
Leu
CAA
[ENA]
¡û
>W2012130970
VSJK01000005
Alphaproteobacteria
Oceaniovalibus sp. ACAM 378 [VSJK]
18031
17948
-
Leu
CAA
[ENA]
¡û
>W2110049083
BMYJ01000001
Alphaproteobacteria
Gemmobacter tilapiae KCTC 23310 [BMYJ]
421555
421472
-
Leu
CAA
[ENA]
¡û
>W2110240230
JACNMM010000013
Alphaproteobacteria
Oceaniglobus trochenteri G4 [JACNMM]
74164
74247
+
Leu
CAA
[ENA]
¡û
>W2110240555
JACNMU010000006
Alphaproteobacteria
Fluviibacterium sp. MJW13 [JACNMU]
99479
99396
-
Leu
CAA
[ENA]
¡û
>C201220469
CP049028
Alphaproteobacteria
Rhodobacteraceae bacterium SC52 [CP049028]
2461315
2461232
-
Leu
CAA
-
¡û
>C211062883
CP045201
Alphaproteobacteria
Pseudopuniceibacterium antarcticum HQ09 [CP045201]
1328317
1328234
-
Leu
CAA
-
¡û
>W1511576927
LAQD01000056
Alphaproteobacteria
Rhodobacteraceae bacterium ASP10-04a [LAQD]
330
247
-
Leu
CAA
[ENA]
¡û
>W1710015382
AQQQ01000001
Alphaproteobacteria
Roseovarius sp. 22II1-1F6A [AQQQ]
359178
359261
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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