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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.124744 (13 seq.)
>W131178021
ARLF01000003
Gammaproteobacteria
Thiomicrorhabdus arctica DSM 13458 [ARLF]
29240
29323
+
Leu
TAG
[ENA]
¡û
>W131186707
ARWI01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Kp2 Kp2 [ARWI]
1754527
1754444
-
Leu
TAG
[ENA]
¡û
>W1711726954
MTSM01000027
Gammaproteobacteria
Oceanospirillum multiglobuliferum [MTSM]
10430
10513
+
Leu
TAG
[ENA]
¡û
>C025359
CP000109
Gammaproteobacteria
Hydrogenovibrio crunogenus [CP000109]
2345610
2345693
+
Leu
TAG
[Ensembl]
¡û
>W141170916
AXZC01000002
Gammaproteobacteria
Thiomicrorhabdus chilensis DSM 12352 [AXZC]
27211
27128
-
Leu
TAG
[ENA]
¡û
>C191084387
CP032096
Gammaproteobacteria
Hydrogenovibrio crunogenus SP-41 [CP032096]
2367059
2367142
+
Leu
TAG
-
¡û
>C191180158
CP040602
Gammaproteobacteria
Thiomicrorhabdus sediminis G1 [CP040602]
2297138
2297221
+
Leu
TAG
-
¡û
>W141733816
JNLD01000006
Gammaproteobacteria
Thiomicrorhabdus sp. Milos-T2 Milos-T2 [JNLD]
160227
160310
+
Leu
TAG
[ENA]
¡û
>W1810185560
PKGB01000028
Gammaproteobacteria
Hydrogenovibrio sp. SC-1 [PKGB]
9095
9178
+
Leu
TAG
[ENA]
¡û
>ENV09001645
ACQI01000296
Hydrothermal vent metagenome LCHCB.C1
45
128
+
Leu
TAG
[ENA]
¡û
>C231004127
AP024202
Gammaproteobacteria
Thiomicrorhabdus immobilis Am19 [AP024202]
2443042
2443125
+
Leu
TAG
-
¡û
>C231452560
CP102381
Gammaproteobacteria
Thiomicrorhabdus sp. XGS-01 [CP102381]
2391079
2391162
+
Leu
TAG
-
¡û
>W1710601419
FUXG01000026
Gammaproteobacteria
Oceanospirillum multiglobuliferum [FUXG]
31414
31331
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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