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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.125090 (74 seq.)
>W1711128591
LUSO01000010
Bacillota
Clostridium baratii [LUSO]
89124
89207
+
Leu
TAG
[ENA]
¡û
>W1711308438
MAPZ01000011
Bacillota
Clostridium paraputrificum [MAPZ]
206195
206112
-
Leu
TAG
[ENA]
¡û
>W1711462128
MJHM01000003
Bacillota
Clostridium baratii [MJHM]
3297
3214
-
Leu
TAG
[ENA]
¡û
>W1711462253
MJHN01000024
Bacillota
Clostridium baratii [MJHN]
3262
3179
-
Leu
TAG
[ENA]
¡û
>WENV180456681
OBXR01003400
[OBXR] human gut metagenome; faeces
719
636
-
Leu
TAG
[ENA]
¡û
>WENV180509521
OCAV01030844
[OCAV] human gut metagenome; faeces
148
65
-
Leu
TAG
[ENA]
¡û
>WENV180601420
OCPQ01040793
[OCPQ] human gut metagenome; faeces
257
340
+
Leu
TAG
[ENA]
¡û
>WENV180605920
OCPT01001837
[OCPT] human gut metagenome; human gut
10895
10812
-
Leu
TAG
[ENA]
¡û
>WENV180605956
OCPT01002222
[OCPT] human gut metagenome; human gut
9071
9154
+
Leu
TAG
[ENA]
¡û
>WENV180743075
ODHH01086995
[ODHH] human metagenome; G_DNA_Stool
308
391
+
Leu
TAG
[ENA]
¡û
>WENV180826820
ODJZ01043245
[ODJZ] human metagenome; G_DNA_Stool
210
127
-
Leu
TAG
[ENA]
¡û
>WENV180994302
ODVQ01057430
[ODVQ] human metagenome; G_DNA_Stool
427
510
+
Leu
TAG
[ENA]
¡û
>WENV181553341
OGIQ01021770
[OGIQ] metagenome; Human gut stool
800
883
+
Leu
TAG
[ENA]
¡û
>WENV181556343
OGIU01012650
[OGIU] metagenome; Human gut stool
1865
1948
+
Leu
TAG
[ENA]
¡û
>WENV181558452
OGIX01000898
[OGIX] metagenome; Human gut stool
12266
12349
+
Leu
TAG
[ENA]
¡û
>WENV181592645
OGKR01032126
[OGKR] metagenome; Human gut stool
61
144
+
Leu
TAG
[ENA]
¡û
>WENV181788936
OGRO01005408
[OGRO] human gut metagenome; faeces
144
61
-
Leu
TAG
[ENA]
¡û
>WENV181875679
OGXC01000049
[OGXC] human gut metagenome; faeces
16829
16912
+
Leu
TAG
[ENA]
¡û
>WENV181921533
OGYJ01068119
[OGYJ] human gut metagenome; faeces
401
484
+
Leu
TAG
[ENA]
¡û
>WENV182325617
OHYS01053305
[OHYS] human gut metagenome; feces
405
322
-
Leu
TAG
[ENA]
¡û
>W141259118
CBYM010000029
Bacillota
Clostridium saudiense JCC [CBYM]
31858
31941
+
Leu
TAG
[ENA]
¡û
>W141265554
CCFI01000015
Bacillota
Clostridium jeddahitimonense CL-2 [CCFI]
91815
91898
+
Leu
TAG
[ENA]
¡û
>W141267533
CCNP01000015
Bacillota
Clostridium jeddahitimonense CL-2 [CCNP]
91815
91898
+
Leu
TAG
[ENA]
¡û
>W141267546
CCNP01000016
Bacillota
Clostridium jeddahitimonense CL-2 [CCNP]
1847
1930
+
Leu
TAG
[ENA]
¡û
>W141267552
CCNP01000017
Bacillota
Clostridium jeddahitimonense CL-2 [CCNP]
310
393
+
Leu
TAG
[ENA]
¡û
>W141267560
CCNP01000017
Bacillota
Clostridium jeddahitimonense CL-2 [CCNP]
963
1046
+
Leu
TAG
[ENA]
¡û
>WENV183074323
OLIU01030339
[OLIU] human gut metagenome; stool sample
533
450
-
Leu
TAG
[ENA]
¡û
>WENV183079147
OLIX01012416
[OLIX] human gut metagenome; feces
2965
3048
+
Leu
TAG
[ENA]
¡û
>WENV183103541
OLNJ01001013
[OLNJ] human gut metagenome; faeces
17402
17485
+
Leu
TAG
[ENA]
¡û
>WENV183147010
OLOM01056816
[OLOM] human gut metagenome; faeces
382
465
+
Leu
TAG
[ENA]
¡û
>WENV183176693
OLPF01035196
[OLPF] human gut metagenome; faeces
480
397
-
Leu
TAG
[ENA]
¡û
>WENV183197157
OLPU01016945
[OLPU] human gut metagenome; faeces
1848
1765
-
Leu
TAG
[ENA]
¡û
>WENV183234090
OLQV01010986
[OLQV] human gut metagenome; faeces
98
15
-
Leu
TAG
[ENA]
¡û
>WENV183241912
OLRB01001274
[OLRB] human gut metagenome; faeces
245
328
+
Leu
TAG
[ENA]
¡û
>WENV183523990
ONZS01028854
[ONZS] human gut metagenome; human gut
284
367
+
Leu
TAG
[ENA]
¡û
>C191025610
CP023671
Bacillota
Clostridium septicum DSM 7534 [CP023671]
2095503
2095586
+
Leu
TAG
-
¡û
>C191123805
CP034358
Bacillota
Clostridium septicum VAT12 [CP034358]
880346
880429
+
Leu
TAG
-
¡û
>C191222067
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
736131
736214
+
Leu
TAG
-
¡û
>C191222076
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
736985
737068
+
Leu
TAG
-
¡û
>C191222085
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
737839
737922
+
Leu
TAG
-
¡û
>C151014216
CP006905
Bacillota
Clostridium baratii str. Sullivan [CP006905]
1629946
1630029
+
Leu
TAG
[Ensembl]
¡û
>W2010255252
CABJBI020000036
Bacillota
Clostridiaceae bacterium [CABJBI]
31971
32054
+
Leu
TAG
[ENA]
¡û
>W2010255292
CABJBI020000130
Bacillota
Clostridiaceae bacterium [CABJBI]
370
287
-
Leu
TAG
[ENA]
¡û
>W2010273345
CABKUQ020000011
Bacillota
Clostridiaceae bacterium [CABKUQ]
1466331
1466248
-
Leu
TAG
[ENA]
¡û
>W2010282720
CABMIZ010000073
Bacillota
Clostridium septicum [CABMIZ]
3470
3553
+
Leu
TAG
[ENA]
¡û
>W2110076250
CACRTV010000035
Bacillota
Clostridium paraputrificum [CACRTV]
104557
104640
+
Leu
TAG
[ENA]
¡û
>W2110157477
JAASHD010000001
Bacillota
Clostridium sp. K04 [JAASHD]
146921
147004
+
Leu
TAG
[ENA]
¡û
>W2110157493
JAASHD010000011
Bacillota
Clostridium sp. K04 [JAASHD]
68446
68529
+
Leu
TAG
[ENA]
¡û
>W2110157501
JAASHD010000011
Bacillota
Clostridium sp. K04 [JAASHD]
69355
69438
+
Leu
TAG
[ENA]
¡û
>W2110244591
JACOOO010000047
Bacillota
Clostridium sp. NSJ-6 [JACOOO]
137975
138058
+
Leu
TAG
[ENA]
¡û
>W2110258641
JACSNU010000061
Bacillota
Clostridium saudiense An434a [JACSNU]
473
390
-
Leu
TAG
[ENA]
¡û
>W2110258663
JACSNU010001691
Bacillota
Clostridium saudiense An434a [JACSNU]
246
163
-
Leu
TAG
[ENA]
¡û
>W2110261216
JACSRA010000074
Bacillota
Clostridium sp. Sa3CVN1 [JACSRA]
425
342
-
Leu
TAG
[ENA]
¡û
>W2110339611
JADMPW010000001
Bacillota
Clostridium paraputrificum 1001311H_170123_G3 [JADMPW]
270232
270149
-
Leu
TAG
[ENA]
¡û
>W2110343408
JADMVG010000002
Bacillota
Clostridium celatum D43t1_170807_C1 [JADMVG]
49843
49926
+
Leu
TAG
[ENA]
¡û
>W2110365476
JADPBQ010000011
Bacillota
Clostridium sp. 1001271B_151109_B4 [JADPBQ]
116423
116506
+
Leu
TAG
[ENA]
¡û
>W2110368670
JADPGF010000010
Bacillota
Clostridium saudiense 1001713B170131_170501_D2 [JADPGF]
32069
32152
+
Leu
TAG
[ENA]
¡û
>W2110368722
JADPGH010000008
Bacillota
Clostridium saudiense D41t1_190614_B7 [JADPGH]
32431
32514
+
Leu
TAG
[ENA]
¡û
>W2110368820
JADPGI010000026
Bacillota
Clostridium saudiense 1001283B150217_161031_B10 [JADPGI]
22204
22121
-
Leu
TAG
[ENA]
¡û
>W2110368844
JADPGI010000067
Bacillota
Clostridium saudiense 1001283B150217_161031_B10 [JADPGI]
11096
11013
-
Leu
TAG
[ENA]
¡û
>W2110368928
JADPGK010000016
Bacillota
Clostridium saudiense D40t1_170626_B10 [JADPGK]
4228
4311
+
Leu
TAG
[ENA]
¡û
>W2110369190
JADPGP010000008
Bacillota
Clostridium saudiense 1001713B170131_170501_F1 [JADPGP]
32216
32299
+
Leu
TAG
[ENA]
¡û
>W2110369265
JADPGQ010000027
Bacillota
Clostridium saudiense 1001275B_160808_G2 [JADPGQ]
22897
22814
-
Leu
TAG
[ENA]
¡û
>W2110370231
JADPLQ010000003
Bacillota
Clostridium saudiense 1001283B150225_161107_D12 [JADPLQ]
366
283
-
Leu
TAG
[ENA]
¡û
>W2110370235
JADPLQ010000015
Bacillota
Clostridium saudiense 1001283B150225_161107_D12 [JADPLQ]
1441
1524
+
Leu
TAG
[ENA]
¡û
>C231418542
CP099799
Bacillota
Clostridium septicum RMA 8861 [CP099799]
368429
368512
+
Leu
TAG
-
¡û
>C241297362
CP131445
Bacillota
Clostridium septicum WW106 [CP131445]
363544
363627
+
Leu
TAG
-
¡û
>W1510755220
CYSO01000011
Bacillota
Clostridium massiliamazoniense ND2 [CYSO]
1466331
1466248
-
Leu
TAG
[ENA]
¡û
>W1610099897
CYYT01000015
Bacillota
Clostridium disporicum [CYYT]
70045
69962
-
Leu
TAG
[ENA]
¡û
>W1610101619
CYZV01000007
Bacillota
Clostridium disporicum [CYZV]
31923
32006
+
Leu
TAG
[ENA]
¡û
>W1610507773
FLTT01000073
Bacillota
Clostridium septicum [FLTT]
3470
3553
+
Leu
TAG
[ENA]
¡û
>W1710102652
CYYT01000015
Bacillota
Clostridium disporicum [CYYT]
70045
69962
-
Leu
TAG
[ENA]
¡û
>W1710104374
CYZV01000007
Bacillota
Clostridium disporicum [CYZV]
31923
32006
+
Leu
TAG
[ENA]
¡û
>W1710499991
FLTT01000073
Bacillota
Clostridium septicum [FLTT]
3470
3553
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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