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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.125267 (37 seq.)
>W1710786468
LJIY01000014
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
268
352
+
Leu
TAG
[ENA]
¡û
>W1711632741
MPTA01000007
Bacillota
Paenisporosarcina indica [MPTA]
229514
229430
-
Leu
TAG
[ENA]
¡û
>W1711632765
MPTA01000019
Bacillota
Paenisporosarcina indica [MPTA]
20
104
+
Leu
TAG
[ENA]
¡û
>W1711704744
MSPU01000033
Bacillota
Viridibacillus sp. FSL H8-0123 [MSPU]
379
463
+
Leu
TAG
[ENA]
¡û
>W131000623
AGEQ01000002
Bacillota
Paenisporosarcina sp. HGH0030 [AGEQ]
240
324
+
Leu
TAG
[ENA]
¡û
>W131038525
AMGD01000079
Bacillota
Paenisporosarcina sp. TG-14 [AMGD]
311
395
+
Leu
TAG
[ENA]
¡û
>W131038550
AMGD01000129
Bacillota
Paenisporosarcina sp. TG-14 [AMGD]
520
604
+
Leu
TAG
[ENA]
¡û
>W131226187
AUEE01000007
Bacillota
Jeotgalicoccus marinus DSM 19772 [AUEE]
645
729
+
Leu
TAG
[ENA]
¡û
>W141273188
CCSE01000001
Bacillota
Jeotgalicoccus saudimassiliensis 13MG44_air [CCSE]
1554599
1554683
+
Leu
TAG
[ENA]
¡û
>WENV170574133
FLYM01008595
[FLYM] hot springs metagenome; Sediment
736
652
-
Leu
TAG
[ENA]
¢þ
>C181095443
CP024123
Bacillota
Solibacillus sp. R5-41 [CP024123]
106384
106468
+
Leu
TAG
-
¡û
>C181095502
CP024123
Bacillota
Solibacillus sp. R5-41 [CP024123]
3371750
3371666
-
Leu
TAG
-
¡û
>C181095522
CP024123
Bacillota
Solibacillus sp. R5-41 [CP024123]
3368779
3368695
-
Leu
TAG
-
¡û
>C191089354
CP032418
Bacillota
Paenisporosarcina cavernae K2R23-3 [CP032418]
5377
5459
+
Leu
TAG
-
¡û
>C191089370
CP032418
Bacillota
Paenisporosarcina cavernae K2R23-3 [CP032418]
2464369
2464287
-
Leu
TAG
-
¡û
>C191089415
CP032418
Bacillota
Paenisporosarcina cavernae K2R23-3 [CP032418]
1677899
1677817
-
Leu
TAG
-
¡û
>C191089435
CP032418
Bacillota
Paenisporosarcina cavernae K2R23-3 [CP032418]
6535
6453
-
Leu
TAG
-
¡û
>C191157132
CP038015
Bacillota
Paenisporosarcina antarctica CGMCC 1.6503 [CP038015]
1062484
1062568
+
Leu
TAG
-
¡û
>W1910550979
FZRJ01000013
Bacillota
Cytobacillus massiliigabonensis Marseille-P2639 [FZRJ]
65406
65490
+
Leu
TAG
[ENA]
¡û
>W1910551090
FZRJ01000053
Bacillota
Cytobacillus massiliigabonensis Marseille-P2639 [FZRJ]
114993
115077
+
Leu
TAG
[ENA]
¡û
>W1910940981
NJAY01000002
Bacillota
Bacillus xiapuensis FJAT-46582 [NJAY]
174637
174718
+
Leu
TAG
[ENA]
¡û
>W1911618393
PPRQ01000180
Bacillota
Mammaliicoccus vitulinus DSM 15615 [PPRQ]
367
448
+
Leu
TAG
[ENA]
¡û
>W1911783732
QXTN01000009
Bacillota
Mammaliicoccus vitulinus SNUC 4525 [QXTN]
92735
92654
-
Leu
TAG
[ENA]
¡û
>W1911783818
QXTO01000104
Bacillota
Mammaliicoccus vitulinus SNUC 430 [QXTO]
7761
7680
-
Leu
TAG
[ENA]
¡û
>W1810120844
PHTX01000001
Bacillota
Viridibacillus sp. OK051 [PHTX]
2418744
2418828
+
Leu
TAG
[ENA]
¡û
>W1810438012
PZFG01000001
Bacillota
Mammaliicoccus vitulinus SNUC 2436 [PZFG]
176136
176055
-
Leu
TAG
[ENA]
¡û
>W1810438244
PZFK01000016
Bacillota
Mammaliicoccus vitulinus SNUC 2204 [PZFK]
403
484
+
Leu
TAG
[ENA]
¡û
>W1810438325
PZFL01000128
Bacillota
Mammaliicoccus vitulinus SNUC 730 [PZFL]
589
670
+
Leu
TAG
[ENA]
¡û
>W1810514002
QBUC01000078
Bacillota
Paenisporosarcina sp. OV554 [QBUC]
398
482
+
Leu
TAG
[ENA]
¡û
>W1810591535
QFVR01000016
Bacillota
Kurthia sibirica ATCC 49154 [QFVR]
72670
72586
-
Leu
TAG
[ENA]
¡û
>W1610073501
BCVX01000026
Bacillota
Lysinibacillus odysseyi 34hs-1 = NBRC 100172 [BCVX]
414
499
+
Leu
TAG
[ENA]
¡û
>W121111240
ALJG01000056
Bacillota
Paenisporosarcina sp. TG20 TG20 [ALJG]
549
633
+
Leu
TAG
[ENA]
¡û
>W1610650323
LJIY01000014
Bacillota
Psychrobacillus sp. FJAT-21963 [LJIY]
268
352
+
Leu
TAG
[ENA]
¡û
>W1710070619
BCVX01000026
Bacillota
Lysinibacillus odysseyi 34hs-1 = NBRC 100172 [BCVX]
414
499
+
Leu
TAG
[ENA]
¡û
>W1710552625
FOGY01000036
Bacillota
Psychrobacillus sp. OK032 [FOGY]
958
874
-
Leu
TAG
[ENA]
¡û
>W1710552637
FOGY01000040
Bacillota
Psychrobacillus sp. OK032 [FOGY]
711
627
-
Leu
TAG
[ENA]
¡û
>W1710569559
FOUN01000013
Bacillota
Psychrobacillus psychrodurans [FOUN]
387
471
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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