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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.125690 (18 seq.)
>WENV180242006
OBDI01049789
[OBDI] metagenome; diffuse fluid
13
96
+
Leu
GAG
[ENA]
¡û
>WENV180275538
OBHT01060385
[OBHT] metagenome; hydrothermal vent
26
109
+
Leu
GAG
[ENA]
¡û
>WENV180288329
OBIL01125572
[OBIL] metagenome; hydrothermal vent
114
197
+
Leu
GAG
[ENA]
¡û
>WENV180581072
OCMH01022804
[OCMH] metagenome; diffuse fluid
316
233
-
Leu
GAG
[ENA]
¡û
>WENV180583907
OCNB01269924
[OCNB] metagenome; diffuse fluid
94
11
-
Leu
GAG
[ENA]
¡û
>WENV180634612
OCRB01046109
[OCRB] metagenome; diffuse fluid
153
236
+
Leu
GAG
[ENA]
¡û
>WENV181209818
OFBF01002393
[OFBF] metagenome; hydrothermal vent
168
85
-
Leu
GAG
[ENA]
¡û
>WENV181213656
OFBV01018707
[OFBV] metagenome; hydrothermal vent
377
460
+
Leu
GAG
[ENA]
¡û
>WENV170571303
FLOH01000125
[FLOH] marine metagenome; water
27304
27221
-
Leu
GAG
[ENA]
¡û
>WENV170575640
FPHH01000029
[FPHH] hydrothermal vent metagenome genome assembly, contig: NODE_101.; water
10350
10433
+
Leu
GAG
[ENA]
¡û
>WENV170575722
FPHK01000070
[FPHK] hydrothermal vent metagenome genome assembly, contig: NODE_31.; water
5279
5196
-
Leu
GAG
[ENA]
¡û
>WENV170692775
LGOV01028987
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
1234
1151
-
Leu
GAG
[ENA]
¡û
>W2011544795
SDID01000004
Campylobacterota
Sulfurimonas sp. NW8N [SDID]
69781
69864
+
Leu
GAG
[ENA]
¡û
>C211052481
CP041235
Campylobacterota
Sulfurimonas sp. S2-6 [CP041235]
2077103
2077020
-
Leu
GAG
-
¡û
>C211052663
CP041406
Campylobacterota
Sulfurimonas paralvinellae GO25 [CP041406]
1661232
1661149
-
Leu
GAG
-
¡û
>C231194025
CP084578
Campylobacterota
Sulfurimonas sp. SWIR-19 [CP084578]
2127178
2127095
-
Leu
GAG
-
¡û
>C241042969
CP035534
Campylobacterota
Sulfurimonas hydrogeniphila NW10 [CP035534]
225055
225138
+
Leu
GAG
-
¡û
>C11119342
CP002205
Campylobacterota
Sulfurimonas autotrophica DSM 16294 [CP002205]
1763464
1763381
-
Leu
GAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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