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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.125714 (98 seq.)
>WENV180697937
ODDE01012027
[ODDE] human metagenome; G_DNA_Supragingival plaque
1082
1001
-
Leu
TAG
[ENA]
¡û
>WENV180728200
ODGU01031311
[ODGU] human metagenome; G_DNA_Supragingival plaque
1247
1166
-
Leu
TAG
[ENA]
¡û
>WENV180728424
ODGU01048653
[ODGU] human metagenome; G_DNA_Supragingival plaque
1232
1151
-
Leu
TAG
[ENA]
¡û
>WENV180728628
ODGU01071637
[ODGU] human metagenome; G_DNA_Supragingival plaque
5
86
+
Leu
TAG
[ENA]
¡û
>WENV180732021
ODGW01073158
[ODGW] human metagenome; G_DNA_Supragingival plaque
108
27
-
Leu
TAG
[ENA]
¡û
>WENV180733903
ODGZ01001299
[ODGZ] human metagenome; G_DNA_Supragingival plaque
12074
11992
-
Leu
TAG
[ENA]
¡û
>WENV180734258
ODGZ01004436
[ODGZ] human metagenome; G_DNA_Supragingival plaque
3898
3979
+
Leu
TAG
[ENA]
¡û
>WENV180735605
ODHB01000105
[ODHB] human metagenome; G_DNA_Supragingival plaque
30360
30441
+
Leu
TAG
[ENA]
¡û
>WENV180749942
ODHS01000149
[ODHS] human metagenome; G_DNA_Supragingival plaque
38179
38260
+
Leu
TAG
[ENA]
¡û
>WENV180751684
ODHS01108288
[ODHS] human metagenome; G_DNA_Supragingival plaque
330
249
-
Leu
TAG
[ENA]
¡û
>WENV180754962
ODHU01005096
[ODHU] human metagenome; G_DNA_Supragingival plaque
1238
1157
-
Leu
TAG
[ENA]
¡û
>WENV180777183
ODIL01000280
[ODIL] human metagenome; G_DNA_Supragingival plaque
5839
5920
+
Leu
TAG
[ENA]
¡û
>WENV180778496
ODIM01010586
[ODIM] human metagenome; G_DNA_Supragingival plaque
398
479
+
Leu
TAG
[ENA]
¡û
>WENV180781588
ODIP01001010
[ODIP] human metagenome; G_DNA_Supragingival plaque
5294
5212
-
Leu
TAG
[ENA]
¡û
>WENV180788118
ODIS01032542
[ODIS] human metagenome; G_DNA_Supragingival plaque
1233
1152
-
Leu
TAG
[ENA]
¡û
>WENV180796815
ODJB01014905
[ODJB] human metagenome; G_DNA_Supragingival plaque
1600
1519
-
Leu
TAG
[ENA]
¡û
>WENV180801217
ODJD01014259
[ODJD] human metagenome; G_DNA_Supragingival plaque
964
882
-
Leu
TAG
[ENA]
¡û
>WENV180804222
ODJG01001161
[ODJG] human metagenome; G_DNA_Supragingival plaque
3172
3253
+
Leu
TAG
[ENA]
¡û
>WENV180804461
ODJG01003145
[ODJG] human metagenome; G_DNA_Supragingival plaque
347
429
+
Leu
TAG
[ENA]
¡û
>WENV180814120
ODJO01007666
[ODJO] human metagenome; G_DNA_Supragingival plaque
976
895
-
Leu
TAG
[ENA]
¡û
>WENV180823151
ODJW01006287
[ODJW] human metagenome; G_DNA_Supragingival plaque
1229
1148
-
Leu
TAG
[ENA]
¡û
>WENV180823192
ODJW01008294
[ODJW] human metagenome; G_DNA_Supragingival plaque
520
601
+
Leu
TAG
[ENA]
¡û
>WENV180824733
ODJX01038054
[ODJX] human metagenome; G_DNA_Supragingival plaque
173
254
+
Leu
TAG
[ENA]
¡û
>WENV180833166
ODKC01018606
[ODKC] human metagenome; G_DNA_Supragingival plaque
5
86
+
Leu
TAG
[ENA]
¡û
>WENV180833401
ODKC01042851
[ODKC] human metagenome; G_DNA_Supragingival plaque
5
87
+
Leu
TAG
[ENA]
¡û
>WENV180833814
ODKD01000342
[ODKD] human metagenome; G_DNA_Supragingival plaque
6638
6557
-
Leu
TAG
[ENA]
¡û
>WENV180834081
ODKD01002550
[ODKD] human metagenome; G_DNA_Supragingival plaque
1802
1721
-
Leu
TAG
[ENA]
¡û
>WENV180835784
ODKE01012696
[ODKE] human metagenome; G_DNA_Supragingival plaque
1358
1277
-
Leu
TAG
[ENA]
¡û
>WENV180844052
ODKN01028820
[ODKN] human metagenome; G_DNA_Supragingival plaque
1148
1067
-
Leu
TAG
[ENA]
¡û
>WENV180844367
ODKN01091096
[ODKN] human metagenome; G_DNA_Supragingival plaque
458
376
-
Leu
TAG
[ENA]
¡û
>WENV180845955
ODKT01003313
[ODKT] human metagenome; G_DNA_Supragingival plaque
5555
5474
-
Leu
TAG
[ENA]
¡û
>WENV180846778
ODKT01022762
[ODKT] human metagenome; G_DNA_Supragingival plaque
802
884
+
Leu
TAG
[ENA]
¡û
>WENV180846985
ODKT01033115
[ODKT] human metagenome; G_DNA_Supragingival plaque
1083
1002
-
Leu
TAG
[ENA]
¡û
>WENV180859354
ODLD01000453
[ODLD] human metagenome; G_DNA_Supragingival plaque
18546
18465
-
Leu
TAG
[ENA]
¡û
>WENV180889127
ODMN01013447
[ODMN] human metagenome; G_DNA_Supragingival plaque
1648
1566
-
Leu
TAG
[ENA]
¡û
>WENV180922459
ODTJ01004344
[ODTJ] human metagenome; G_DNA_Supragingival plaque
5267
5186
-
Leu
TAG
[ENA]
¡û
>WENV180924089
ODTK01001044
[ODTK] human metagenome; G_DNA_Supragingival plaque
12435
12354
-
Leu
TAG
[ENA]
¡û
>WENV180927552
ODTM01001151
[ODTM] human metagenome; G_DNA_Supragingival plaque
5530
5449
-
Leu
TAG
[ENA]
¡û
>WENV180927857
ODTM01005474
[ODTM] human metagenome; G_DNA_Supragingival plaque
2698
2779
+
Leu
TAG
[ENA]
¡û
>WENV180933332
ODTR01000032
[ODTR] human metagenome; G_DNA_Supragingival plaque
36120
36039
-
Leu
TAG
[ENA]
¡û
>WENV180934388
ODTS01000006
[ODTS] human metagenome; G_DNA_Subgingival plaque
35707
35626
-
Leu
TAG
[ENA]
¡û
>WENV180938182
ODTX01000790
[ODTX] human metagenome; G_DNA_Supragingival plaque
4142
4223
+
Leu
TAG
[ENA]
¡û
>WENV180938323
ODTX01001400
[ODTX] human metagenome; G_DNA_Supragingival plaque
5560
5479
-
Leu
TAG
[ENA]
¡û
>WENV180938884
ODTX01008995
[ODTX] human metagenome; G_DNA_Supragingival plaque
373
455
+
Leu
TAG
[ENA]
¡û
>WENV180944021
ODUC01006288
[ODUC] human metagenome; G_DNA_Supragingival plaque
4963
4882
-
Leu
TAG
[ENA]
¡û
>WENV180958510
ODUL01006912
[ODUL] human metagenome; G_DNA_Supragingival plaque
1251
1170
-
Leu
TAG
[ENA]
¡û
>WENV180963839
ODUO01000005
[ODUO] human metagenome; G_DNA_Supragingival plaque
53553
53634
+
Leu
TAG
[ENA]
¡û
>WENV180972789
ODUW01000200
[ODUW] human metagenome; G_DNA_Supragingival plaque
24368
24449
+
Leu
TAG
[ENA]
¡û
>WENV180973895
ODUW01023862
[ODUW] human metagenome; G_DNA_Supragingival plaque
104
22
-
Leu
TAG
[ENA]
¡û
>WENV180974032
ODUW01044400
[ODUW] human metagenome; G_DNA_Supragingival plaque
380
461
+
Leu
TAG
[ENA]
¡û
>WENV180980398
ODVE01000110
[ODVE] human metagenome; G_DNA_Supragingival plaque
18547
18466
-
Leu
TAG
[ENA]
¡û
>WENV180982502
ODVF01000043
[ODVF] human metagenome; G_DNA_Supragingival plaque
27000
26919
-
Leu
TAG
[ENA]
¡û
>WENV180987726
ODVK01096123
[ODVK] human metagenome; G_DNA_Supragingival plaque
135
53
-
Leu
TAG
[ENA]
¡û
>WENV181002266
ODVX01000150
[ODVX] human metagenome; G_DNA_Supragingival plaque
18640
18559
-
Leu
TAG
[ENA]
¡û
>WENV181007686
ODWE01000463
[ODWE] human metagenome; G_DNA_Supragingival plaque
30228
30309
+
Leu
TAG
[ENA]
¡û
>WENV181008032
ODWE01001583
[ODWE] human metagenome; G_DNA_Supragingival plaque
4284
4366
+
Leu
TAG
[ENA]
¡û
>WENV181009881
ODWE01274441
[ODWE] human metagenome; G_DNA_Supragingival plaque
5
86
+
Leu
TAG
[ENA]
¡û
>WENV181012781
ODWK01019367
[ODWK] human metagenome; G_DNA_Supragingival plaque
158
77
-
Leu
TAG
[ENA]
¡û
>WENV181020007
ODWU01034449
[ODWU] human metagenome; G_DNA_Supragingival plaque
227
309
+
Leu
TAG
[ENA]
¡û
>WENV181029906
ODXF01009040
[ODXF] human metagenome; G_DNA_Supragingival plaque
1071
990
-
Leu
TAG
[ENA]
¡û
>WENV181049628
ODYD01000967
[ODYD] human metagenome; G_DNA_Supragingival plaque
7710
7629
-
Leu
TAG
[ENA]
¡û
>WENV181050431
ODYD01018823
[ODYD] human metagenome; G_DNA_Supragingival plaque
1438
1357
-
Leu
TAG
[ENA]
¡û
>WENV181050491
ODYD01021740
[ODYD] human metagenome; G_DNA_Supragingival plaque
1240
1159
-
Leu
TAG
[ENA]
¡û
>WENV181063371
ODYP01000529
[ODYP] human metagenome; G_DNA_Supragingival plaque
13470
13389
-
Leu
TAG
[ENA]
¡û
>WENV181067234
ODZI01009772
[ODZI] human metagenome; G_DNA_Supragingival plaque
1407
1325
-
Leu
TAG
[ENA]
¡û
>WENV181067524
ODZI01023828
[ODZI] human metagenome; G_DNA_Supragingival plaque
1261
1180
-
Leu
TAG
[ENA]
¡û
>WENV181070606
OEAE01003900
[OEAE] human metagenome; G_DNA_Supragingival plaque
3299
3218
-
Leu
TAG
[ENA]
¡û
>WENV181070841
OEAE01014211
[OEAE] human metagenome; G_DNA_Supragingival plaque
10
91
+
Leu
TAG
[ENA]
¡û
>WENV181076023
OEAP01001334
[OEAP] human metagenome; G_DNA_Supragingival plaque
9052
9133
+
Leu
TAG
[ENA]
¡û
>WENV181077658
OEAP01100406
[OEAP] human metagenome; G_DNA_Supragingival plaque
419
338
-
Leu
TAG
[ENA]
¡û
>WENV181078687
OEAS01000316
[OEAS] human metagenome; G_DNA_Supragingival plaque
30149
30068
-
Leu
TAG
[ENA]
¡û
>WENV181078716
OEAS01000379
[OEAS] human metagenome; G_DNA_Supragingival plaque
774
856
+
Leu
TAG
[ENA]
¡û
>WENV181082559
OEAV01000073
[OEAV] human metagenome; G_DNA_Supragingival plaque
63010
63092
+
Leu
TAG
[ENA]
¡û
>WENV181091243
OEBC01019324
[OEBC] human metagenome; G_DNA_Supragingival plaque
1479
1397
-
Leu
TAG
[ENA]
¡û
>WENV181108043
OEEI01066827
[OEEI] human metagenome; G_DNA_Supragingival plaque
363
444
+
Leu
TAG
[ENA]
¡û
>WENV181137630
OEGJ01010054
[OEGJ] human metagenome; G_DNA_Supragingival plaque
1989
1907
-
Leu
TAG
[ENA]
¡û
>WENV181144093
OEHM01086912
[OEHM] human metagenome; G_DNA_Supragingival plaque
236
155
-
Leu
TAG
[ENA]
¡û
>WENV181145975
OEHQ01000343
[OEHQ] human metagenome; G_DNA_Supragingival plaque
6646
6565
-
Leu
TAG
[ENA]
¡û
>WENV181146626
OEHQ01012421
[OEHQ] human metagenome; G_DNA_Supragingival plaque
1545
1464
-
Leu
TAG
[ENA]
¡û
>WENV181152258
OEIA01000569
[OEIA] human metagenome; G_DNA_Supragingival plaque
6703
6784
+
Leu
TAG
[ENA]
¡û
>WENV181156465
OEIE01018550
[OEIE] human metagenome; G_DNA_Supragingival plaque
83
2
-
Leu
TAG
[ENA]
¡û
>WENV181159187
OEIH01079721
[OEIH] human metagenome; G_DNA_Supragingival plaque
89
170
+
Leu
TAG
[ENA]
¡û
>WENV181160729
OEIK01028668
[OEIK] human metagenome; G_DNA_Supragingival plaque
744
663
-
Leu
TAG
[ENA]
¡û
>WENV181177200
OEJS01000124
[OEJS] human metagenome; G_DNA_Supragingival plaque
20283
20202
-
Leu
TAG
[ENA]
¡û
>WENV181178910
OEJT01000557
[OEJT] human metagenome; G_DNA_Supragingival plaque
13329
13410
+
Leu
TAG
[ENA]
¡û
>WENV181181681
OEJV01000064
[OEJV] human metagenome; G_DNA_Supragingival plaque
18721
18640
-
Leu
TAG
[ENA]
¡û
>C191173822
CP040007
Actinomycetota
Arachnia propionica F0700 [CP040007]
1073791
1073872
+
Leu
TAG
-
¡û
>C191210837
LR134406
Actinomycetota
Arachnia propionica NCTC12967 [LR134406]
1059145
1059226
+
Leu
TAG
-
¡û
>C191214552
LR134535
Actinomycetota
Arachnia propionica NCTC11666 [LR134535]
1059914
1059995
+
Leu
TAG
-
¡û
>W2011451034
RKKA01000001
Actinomycetota
Pseudopropionibacterium propionicum FDAARGOS_578 [RKKA]
839524
839443
-
Leu
TAG
[ENA]
¡û
>W2011951794
UWTZ01000019
Actinomycetota
Pseudopropionibacterium sp. Marseille-P6184 [UWTZ]
107324
107242
-
Leu
TAG
[ENA]
¡û
>C211019801
AP024463
Actinomycetota
Arachnia rubra SK-1 [AP024463]
2178394
2178313
-
Leu
TAG
-
¡û
>C211307336
CP072384
Actinomycetota
Arachnia rubra DSMZ 100122 [CP072384]
2197832
2197751
-
Leu
TAG
-
¡û
>C211307382
CP072385
Actinomycetota
Arachnia propionica F0714 [CP072385]
2396074
2395993
-
Leu
TAG
-
¡û
>C211307401
CP072386
Actinomycetota
Arachnia propionica F0231 [CP072386]
1045286
1045367
+
Leu
TAG
-
¡û
>C121002929
CP002734
Actinomycetota
Arachnia propionica F0230a [CP002734]
1074880
1074961
+
Leu
TAG
[Ensembl]
¡û
>W1610074494
BCWS01000004
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
53182
53101
-
Leu
TAG
[ENA]
¡û
>W1710071612
BCWS01000004
Actinomycetota
Arachnia propionica NBRC 14587 [BCWS]
53182
53101
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK