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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.12623 (141 seq.)
>W1710989113
LPVR01000001
Bacillota
Streptococcus equinus [LPVR]
504499
504587
+
Ser
CGA
[ENA]
¡û
>W1711006406
LQOI01000112
Bacillota
Streptococcus lutetiensis [LQOI]
6352
6440
+
Ser
CGA
[ENA]
¡û
>W131217630
ATWZ01000005
Bacillota
Streptococcus equinus SN033 [ATWZ]
1644
1556
-
Ser
CGA
[ENA]
¡û
>W131232302
AUJD01000003
Bacillota
Streptococcus equinus B315 [AUJD]
1766
1678
-
Ser
CGA
[ENA]
¡û
>WENV180116407
OAQU01000346
[OAQU] human gut metagenome; ENVO:feces
6468
6556
+
Ser
CGA
[ENA]
¡û
>WENV180116697
OAQX01000118
[OAQX] human gut metagenome; ENVO:feces
7391
7303
-
Ser
CGA
[ENA]
¡û
>WENV180117329
OARK01000151
[OARK] human gut metagenome; ENVO:feces
16135
16223
+
Ser
CGA
[ENA]
¡û
>WENV180239264
OBDB01000409
[OBDB] human gut metagenome; human gut
219
131
-
Ser
CGA
[ENA]
¡û
>WENV180316631
OBKI01072454
[OBKI] human gut metagenome; human gut
134
222
+
Ser
CGA
[ENA]
¡û
>WENV180401598
OBRM01000214
[OBRM] human gut metagenome; ENVO:feces
6468
6556
+
Ser
CGA
[ENA]
¡û
>WENV180408321
OBUS01000520
[OBUS] human gut metagenome; faeces
21984
22072
+
Ser
CGA
[ENA]
¡û
>WENV180411170
OBUY01001275
[OBUY] human gut metagenome; faeces
206
118
-
Ser
CGA
[ENA]
¡û
>WENV180418850
OBVL01000219
[OBVL] human gut metagenome; faeces
206
118
-
Ser
CGA
[ENA]
¡û
>WENV180482549
OBZG01001121
[OBZG] human gut metagenome; faeces
206
118
-
Ser
CGA
[ENA]
¡û
>W141071829
ASKA01000038
Bacillota
Streptococcus sp. HSISB1 [ASKA]
134014
134102
+
Ser
CGA
[ENA]
¡û
>W141091745
AUZG01000012
Bacillota
Streptococcus equinus ATCC 33317 [AUZG]
234797
234709
-
Ser
CGA
[ENA]
¡û
>W141091776
AUZH01000012
Bacillota
Streptococcus equinus JB1 [AUZH]
13778
13690
-
Ser
CGA
[ENA]
¡û
>WENV181366457
OFPS01004086
[OFPS] human gut metagenome; human gut
166
78
-
Ser
CGA
[ENA]
¡û
>WENV181564297
OGJH01003254
[OGJH] metagenome; Human gut stool
8650
8738
+
Ser
CGA
[ENA]
¡û
>WENV181794875
OGRS01004712
[OGRS] human gut metagenome; faeces
166
78
-
Ser
CGA
[ENA]
¡û
>WENV182099481
OHHR01001892
[OHHR] human gut metagenome; feces
7867
7955
+
Ser
CGA
[ENA]
¡û
>WENV182194470
OHPC01002239
[OHPC] human gut metagenome; feces
6691
6779
+
Ser
CGA
[ENA]
¡û
>WENV182275620
OHUN01002014
[OHUN] human gut metagenome; feces
192
104
-
Ser
CGA
[ENA]
¡û
>WENV182409788
OIFJ01000300
[OIFJ] human gut metagenome; stool
21992
22080
+
Ser
CGA
[ENA]
¡û
>WENV182426138
OIHN01013839
[OIHN] human gut metagenome; human gut
336
424
+
Ser
CGA
[ENA]
¡û
>WENV182441243
OIKC01004050
[OIKC] human gut metagenome; human gut
1495
1407
-
Ser
CGA
[ENA]
¡û
>WENV182441880
OIKE01004109
[OIKE] human gut metagenome; human gut
1955
2043
+
Ser
CGA
[ENA]
¡û
>WENV182465930
OIOO01001576
[OIOO] human gut metagenome; human gut
3077
2989
-
Ser
CGA
[ENA]
¡û
>WENV182475469
OIQA01005736
[OIQA] human gut metagenome; human gut
639
551
-
Ser
CGA
[ENA]
¡û
>WENV182495673
OITB01003509
[OITB] human gut metagenome; human gut
1384
1296
-
Ser
CGA
[ENA]
¡û
>WENV182497373
OITK01008569
[OITK] human gut metagenome; human gut
69
157
+
Ser
CGA
[ENA]
¡û
>WENV182507858
OIVO01008093
[OIVO] human gut metagenome; human gut
610
698
+
Ser
CGA
[ENA]
¡û
>WENV182901459
OKSV01002277
[OKSV] human gut metagenome; feces
192
104
-
Ser
CGA
[ENA]
¡û
>WENV182959018
OKWI01000172
[OKWI] human gut metagenome; stool
21992
22080
+
Ser
CGA
[ENA]
¡û
>WENV182961804
OKWL01000364
[OKWL] human gut metagenome; stool
214
126
-
Ser
CGA
[ENA]
¡û
>WENV182962373
OKWN01000376
[OKWN] human gut metagenome; stool
214
126
-
Ser
CGA
[ENA]
¡û
>WENV182965771
OKWT01000182
[OKWT] human gut metagenome; stool
22001
22089
+
Ser
CGA
[ENA]
¡û
>WENV182975165
OKXT01011706
[OKXT] human gut metagenome; human gut
108
20
-
Ser
CGA
[ENA]
¡û
>WENV182991842
OLAR01010412
[OLAR] human gut metagenome; human gut
150
62
-
Ser
CGA
[ENA]
¡û
>WENV183010759
OLDX01000708
[OLDX] human gut metagenome; human gut
262
350
+
Ser
CGA
[ENA]
¡û
>WENV183011165
OLDY01014260
[OLDY] human gut metagenome; human gut
523
435
-
Ser
CGA
[ENA]
¡û
>WENV183238022
OLQY01003317
[OLQY] human gut metagenome; faeces
166
78
-
Ser
CGA
[ENA]
¡û
>WENV183785910
PPYF01298693
[PPYF] human gut metagenome; stool from patient with Crohn's disease
6714
6802
+
Ser
CGA
[ENA]
¡û
>C181207768
LS483348
Bacillota
Streptococcus lutetiensis NCTC8738 [LS483348]
1745548
1745636
+
Ser
CGA
-
¡û
>C181211230
LS483403
Bacillota
Streptococcus lutetiensis NCTC13774 [LS483403]
1581853
1581941
+
Ser
CGA
-
¡û
>C191199792
LR134203
Bacillota
Streptococcus lutetiensis NCTC11436 [LR134203]
395884
395972
+
Ser
CGA
-
¡û
>C191203876
LR134282
Bacillota
Streptococcus equinus NCTC8140 [LR134282]
1673180
1673268
+
Ser
CGA
-
¡û
>C191204496
LR134292
Bacillota
Streptococcus equinus NCTC10389 [LR134292]
1595138
1595226
+
Ser
CGA
-
¡û
>C191222982
LR594042
Bacillota
Streptococcus equinus NCTC8133 [LR594042]
1667331
1667419
+
Ser
CGA
-
¡û
>C191223114
LR594044
Bacillota
Streptococcus lutetiensis NCTC8796 [LR594044]
195548
195460
-
Ser
CGA
-
¡û
>W141733170
JNKQ01000002
Bacillota
Streptococcus equinus 2B [JNKQ]
422040
422128
+
Ser
CGA
[ENA]
¡û
>W141803120
JPGC01000004
Bacillota
Streptococcus equinus [JPGC]
224412
224324
-
Ser
CGA
[ENA]
¡û
>W1910181498
BJMB01000004
Bacillota
Streptococcus equinus NBRC 12057 [BJMB]
93324
93236
-
Ser
CGA
[ENA]
¡û
>C141001335
CP003025
Bacillota
Streptococcus lutetiensis 033 [CP003025]
1770562
1770650
+
Ser
CGA
[Ensembl]
¡û
>W1910550549
FZRA01000001
Bacillota
Streptococcus equinus AR3 [FZRA]
220092
220004
-
Ser
CGA
[ENA]
¡û
>W1911539646
ONUZ01000010
Bacillota
Streptococcus equinus [ONUZ]
1189
1101
-
Ser
CGA
[ENA]
¡û
>W1810823929
QSHE01000004
Bacillota
Streptococcus lutetiensis AM38-16 [QSHE]
122546
122634
+
Ser
CGA
[ENA]
¡û
>W1810829838
QSLI01000020
Bacillota
Streptococcus lutetiensis AM25-7 [QSLI]
196
108
-
Ser
CGA
[ENA]
¡û
>W2010095147
BJMB01000004
Bacillota
Streptococcus equinus NBRC 12057 [BJMB]
93324
93236
-
Ser
CGA
[ENA]
¡û
>W2010165593
CABEIR010000002
Bacillota
Streptococcus lutetiensis NCTC8746 [CABEIR]
1534480
1534568
+
Ser
CGA
[ENA]
¡û
>W2010213094
CABHMN010000080
Bacillota
Streptococcus gallolyticus [CABHMN]
11150
11238
+
Ser
CGA
[ENA]
¡û
>W2010251920
CABIZE020000027
Bacillota
Streptococcus lutetiensis [CABIZE]
364
276
-
Ser
CGA
[ENA]
¡û
>W2010265745
CABKPJ020000001
Bacillota
Streptococcus equinus [CABKPJ]
1202809
1202897
+
Ser
CGA
[ENA]
¡û
>W2010432172
FZRA01000001
Bacillota
Streptococcus equinus AR3 [FZRA]
220092
220004
-
Ser
CGA
[ENA]
¡û
>W2011169921
ONUZ01000010
Bacillota
Streptococcus equinus [ONUZ]
1189
1101
-
Ser
CGA
[ENA]
¡û
>W2011614828
SJWW01000012
Bacillota
Streptococcus sp. KCJ4932 [SJWW]
4634
4546
-
Ser
CGA
[ENA]
¡û
>W2011614950
SJWY01000191
Bacillota
Streptococcus sp. KCJ4950 [SJWY]
2297
2385
+
Ser
CGA
[ENA]
¡û
>W2011667127
SPDR01000001
Bacillota
Streptococcus equinus FMD1 [SPDR]
1279517
1279605
+
Ser
CGA
[ENA]
¡û
>W2011843097
UHFK01000003
Bacillota
Streptococcus equinus NCTC12969 [UHFK]
1218244
1218332
+
Ser
CGA
[ENA]
¡û
>W2011844039
UHHR01000001
Bacillota
Streptococcus equinus NCTC10386 [UHHR]
1592776
1592864
+
Ser
CGA
[ENA]
¡û
>W2110076867
CACRUI010000045
Bacillota
Streptococcus lutetiensis [CACRUI]
513
425
-
Ser
CGA
[ENA]
¡û
>W2110118671
CAJNNO010000001
Bacillota
Streptococcus lutetiensis [CAJNNO]
238016
237928
-
Ser
CGA
[ENA]
¡û
>W2110118713
CAJNNP010000001
Bacillota
Streptococcus lutetiensis [CAJNNP]
238016
237928
-
Ser
CGA
[ENA]
¡û
>W2110118763
CAJNNQ010000001
Bacillota
Streptococcus lutetiensis [CAJNNQ]
1232001
1232089
+
Ser
CGA
[ENA]
¡û
>W2110118818
CAJNNR010000001
Bacillota
Streptococcus lutetiensis [CAJNNR]
230395
230307
-
Ser
CGA
[ENA]
¡û
>W2110118867
CAJNNS010000006
Bacillota
Streptococcus lutetiensis [CAJNNS]
81389
81477
+
Ser
CGA
[ENA]
¡û
>W2110366033
JADPCN010000025
Bacillota
Streptococcus lutetiensis D52t1_170925_A12 [JADPCN]
188
100
-
Ser
CGA
[ENA]
¡û
>W2110428601
JAEMHW010000001
Bacillota
Streptococcus vicugnae SL1232 [JAEMHW]
587152
587240
+
Ser
CGA
[ENA]
¡û
>W2110594016
JAHCZK010000029
Bacillota
Streptococcus lutetiensis P430901 [JAHCZK]
21947
22035
+
Ser
CGA
[ENA]
¡û
>W2110594035
JAHCZL010000002
Bacillota
Streptococcus lutetiensis P4521K1 [JAHCZL]
12819
12731
-
Ser
CGA
[ENA]
¡û
>W2110594303
JAHCZR010000003
Bacillota
Streptococcus lutetiensis P4563KF1 [JAHCZR]
138457
138545
+
Ser
CGA
[ENA]
¡û
>W2110594394
JAHCZT010000002
Bacillota
Streptococcus lutetiensis P4561KF2 [JAHCZT]
139029
139117
+
Ser
CGA
[ENA]
¡û
>W2110594441
JAHCZU010000002
Bacillota
Streptococcus lutetiensis P4561KF1 [JAHCZU]
139029
139117
+
Ser
CGA
[ENA]
¡û
>W2110594495
JAHCZV010000004
Bacillota
Streptococcus lutetiensis P432801 [JAHCZV]
137992
138080
+
Ser
CGA
[ENA]
¡û
>W2110594542
JAHCZW010000005
Bacillota
Streptococcus lutetiensis P432802 [JAHCZW]
138571
138659
+
Ser
CGA
[ENA]
¡û
>W2110594582
JAHCZY010000002
Bacillota
Streptococcus lutetiensis P4561CNA2 [JAHCZY]
139029
139117
+
Ser
CGA
[ENA]
¡û
>W2110594629
JAHCZZ010000002
Bacillota
Streptococcus lutetiensis P4561CNA1 [JAHCZZ]
139029
139117
+
Ser
CGA
[ENA]
¡û
>W2110594752
JAHDAB010000016
Bacillota
Streptococcus lutetiensis P463801 [JAHDAB]
18862
18774
-
Ser
CGA
[ENA]
¡û
>W2110594819
JAHDAD010000004
Bacillota
Streptococcus lutetiensis P430803 [JAHDAD]
137999
138087
+
Ser
CGA
[ENA]
¡û
>W2110594905
JAHDAG010000002
Bacillota
Streptococcus lutetiensis PA11570KF1 [JAHDAG]
138990
139078
+
Ser
CGA
[ENA]
¡û
>W2110594987
JAHDAH010000034
Bacillota
Streptococcus lutetiensis PA11559C2 [JAHDAH]
6427
6515
+
Ser
CGA
[ENA]
¡û
>W2110595009
JAHDAI010000004
Bacillota
PA11362C1(4) [JAHDAI]
642
554
-
Ser
CGA
[ENA]
¡û
>W2110595059
JAHDAJ010000006
Bacillota
Streptococcus lutetiensis PA11380C3 [JAHDAJ]
116329
116417
+
Ser
CGA
[ENA]
¡û
>W2110595111
JAHDAK010000006
Bacillota
Streptococcus lutetiensis PA11380C2 [JAHDAK]
116076
116164
+
Ser
CGA
[ENA]
¡û
>W2110595221
JAHDAM010000019
Bacillota
Streptococcus lutetiensis PA11385KF6 [JAHDAM]
11464
11376
-
Ser
CGA
[ENA]
¡û
>W2110595264
JAHDAN010000010
Bacillota
Streptococcus lutetiensis PA11535C2 [JAHDAN]
291
203
-
Ser
CGA
[ENA]
¡û
>W2110595294
JAHDAN010000047
Bacillota
Streptococcus lutetiensis PA11535C2 [JAHDAN]
4140
4052
-
Ser
CGA
[ENA]
¡û
>W2110595299
JAHDAO010000002
Bacillota
Streptococcus lutetiensis PA11603CN [JAHDAO]
138041
138129
+
Ser
CGA
[ENA]
¡û
>W2110595392
JAHDAQ010000002
Bacillota
Streptococcus lutetiensis PA11577KF2 [JAHDAQ]
35321
35233
-
Ser
CGA
[ENA]
¡û
>W2110595441
JAHDAR010000002
Bacillota
Streptococcus lutetiensis PA11563C1 [JAHDAR]
138217
138305
+
Ser
CGA
[ENA]
¡û
>W2110595478
JAHDAR010000045
Bacillota
Streptococcus lutetiensis PA11563C1 [JAHDAR]
236
324
+
Ser
CGA
[ENA]
¡û
>W2110595683
JAHDJJ010000028
Bacillota
Streptococcus lutetiensis P430902 [JAHDJJ]
21947
22035
+
Ser
CGA
[ENA]
¡û
>W2110595733
JAHDJK010000028
Bacillota
Streptococcus lutetiensis P4296CNA1 [JAHDJK]
21947
22035
+
Ser
CGA
[ENA]
¡û
>W2110595748
JAHDJL010000002
Bacillota
Streptococcus lutetiensis P4521K2 [JAHDJL]
139029
139117
+
Ser
CGA
[ENA]
¡û
>W2110620224
JAHLOM010000039
Bacillota
Streptococcus lutetiensis N105 [JAHLOM]
11280
11368
+
Ser
CGA
[ENA]
¡û
>C201183597
CP046628
Bacillota
Streptococcus equinus CNU 77-23 [CP046628]
800722
800634
-
Ser
CGA
-
¡û
>C201192134
CP046875
Bacillota
Streptococcus sp. CNU 77-61 [CP046875]
1440561
1440649
+
Ser
CGA
-
¡û
>C211240704
CP068056
Bacillota
Streptococcus lutetiensis FDAARGOS_1158 [CP068056]
810638
810550
-
Ser
CGA
-
¡û
>C231139493
CP075172
Bacillota
Streptococcus equinus SheepZ001 [CP075172]
1771241
1771329
+
Ser
CGA
-
¡û
>C231154575
CP076703
Bacillota
Streptococcus equinus S1 [CP076703]
1658302
1658390
+
Ser
CGA
-
¡û
>C231638245
CP121207
Bacillota
Streptococcus ruminicola CNU_77-47 [CP121207]
214244
214156
-
Ser
CGA
-
¡û
>C241112023
CP046624
Bacillota
Streptococcus ruminicola CNU_G3 [CP046624]
1698802
1698890
+
Ser
CGA
-
¡û
>C241112031
CP046629
Bacillota
Streptococcus equinus CNU G6 [CP046629]
403400
403488
+
Ser
CGA
-
¡û
>C241114170
CP046919
Bacillota
Streptococcus ruminicola CNU_G2 [CP046919]
636669
636757
+
Ser
CGA
-
¡û
>C241177621
CP059471
Bacillota
Streptococcus equinus MDC1 [CP059471]
1742849
1742937
+
Ser
CGA
-
¡û
>W1511228274
JNLO01000001
Bacillota
Streptococcus equinus AG46 [JNLO]
1737955
1737867
-
Ser
CGA
[ENA]
¡û
>W11149884
AEVB01000035
Bacillota
Streptococcus equinus ATCC 9812 [AEVB]
95278
95366
+
Ser
CGA
[ENA]
¡û
>C161059394
CP013689
Bacillota
Streptococcus infantarius ICDDRB-NRC-S5 [CP013689]
1599335
1599423
+
Ser
CGA
[Ensembl]
¡û
>W1610843989
LPVR01000001
Bacillota
Streptococcus equinus [LPVR]
504499
504587
+
Ser
CGA
[ENA]
¡û
>W1610857056
LQOI01000112
Bacillota
Streptococcus lutetiensis [LQOI]
6352
6440
+
Ser
CGA
[ENA]
¡û
>W1710504907
FMTH01000001
Bacillota
Streptococcus equinus [FMTH]
861123
861211
+
Ser
CGA
[ENA]
¡û
>W1710519246
FNEP01000010
Bacillota
Streptococcus equinus [FNEP]
59661
59749
+
Ser
CGA
[ENA]
¡û
>W1710522052
FNGX01000007
Bacillota
Streptococcus equinus [FNGX]
25495
25407
-
Ser
CGA
[ENA]
¡û
>W1710525274
FNJK01000004
Bacillota
Streptococcus equinus [FNJK]
187543
187631
+
Ser
CGA
[ENA]
¡û
>W1710525961
FNJX01000001
Bacillota
Streptococcus equinus [FNJX]
213999
213911
-
Ser
CGA
[ENA]
¡û
>W1710525997
FNJY01000001
Bacillota
Streptococcus equinus [FNJY]
1222617
1222705
+
Ser
CGA
[ENA]
¡û
>W1710526159
FNKC01000001
Bacillota
Streptococcus equinus [FNKC]
1205250
1205338
+
Ser
CGA
[ENA]
¡û
>W1710526244
FNKE01000001
Bacillota
Streptococcus equinus [FNKE]
1304346
1304434
+
Ser
CGA
[ENA]
¡û
>W1710528057
FNMW01000001
Bacillota
Streptococcus equinus [FNMW]
1234417
1234505
+
Ser
CGA
[ENA]
¡û
>W1710541012
FNXZ01000001
Bacillota
Streptococcus sp. 45 [FNXZ]
770554
770642
+
Ser
CGA
[ENA]
¡û
>W1710541986
FNYU01000007
Bacillota
Streptococcus equinus [FNYU]
1957
1869
-
Ser
CGA
[ENA]
¡û
>W1710543154
FNZS01000002
Bacillota
Streptococcus equinus [FNZS]
514597
514685
+
Ser
CGA
[ENA]
¡û
>W1710543319
FNZW01000001
Bacillota
Streptococcus equinus [FNZW]
2359
2271
-
Ser
CGA
[ENA]
¡û
>W1710548102
FODM01000001
Bacillota
Streptococcus equinus [FODM]
1247572
1247660
+
Ser
CGA
[ENA]
¡û
>W1710549984
FOEX01000007
Bacillota
Streptococcus equinus [FOEX]
2209
2121
-
Ser
CGA
[ENA]
¡û
>W1710550878
FOFQ01000010
Bacillota
Streptococcus equinus [FOFQ]
59921
60009
+
Ser
CGA
[ENA]
¡û
>W1710557898
FOLK01000001
Bacillota
Streptococcus equinus [FOLK]
790475
790563
+
Ser
CGA
[ENA]
¡û
>W1710562033
FOOP01000002
Bacillota
Streptococcus equinus [FOOP]
102574
102662
+
Ser
CGA
[ENA]
¡û
>W1710568036
FOTG01000002
Bacillota
Streptococcus equinus JB1 [FOTG]
437598
437686
+
Ser
CGA
[ENA]
¡û
>W1710574219
FOYC01000001
Bacillota
Streptococcus equinus [FOYC]
233622
233534
-
Ser
CGA
[ENA]
¡û
>W1710575260
FOZA01000002
Bacillota
Streptococcus equinus [FOZA]
147032
146944
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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