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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.126671 (6 seq.)
>W1711182607
LWJU01000048
Bacillota
Staphylococcus equorum [LWJU]
276
359
+
Tyr
GTA
[ENA]
¡û
>WENV182599855
OJJF01000553
[OJJF] metagenome; faeces
9348
9265
-
Tyr
GTA
[ENA]
¡û
>WENV182658461
OJML01000034
[OJML] human gut metagenome; feces
7095
7178
+
Tyr
GTA
[ENA]
¡û
>WENV170690718
LFRM01357873
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
302
385
+
Tyr
GTA
[ENA]
¡û
>W2110022620
BMFK01000011
Bacillota
Bacillus taiwanensis CGMCC 1.12698 [BMFK]
1355
1438
+
Tyr
GTA
[ENA]
¡û
>W2110461378
JAFBEL010000012
Bacillota
Priestia taiwanensis DSM 27845 [JAFBEL]
21799
21716
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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