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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.126732 (55 seq.)
>W131160381
AQWN01000010
Bacillota
Desulfurispora thermophila DSM 16022 [AQWN]
21531
21608
+
Pro
GGG
[ENA]
¡û
>W131237130
AUMW01000001
Bacillota
Desulfotruncus alcoholivorax DSM 16058 [AUMW]
3907
3984
+
Pro
GGG
[ENA]
¡û
>W131222982
AUBR01000062
Bacillota
Desulfovirgula thermocuniculi DSM 16036 [AUBR]
389
466
+
Pro
GGG
[ENA]
¡û
>C018198
AP009389
Bacillota
Pelotomaculum thermopropionicum SI [AP009389]
1525744
1525667
-
Pro
GGG
[Ensembl]
¡û
>WENV180851707
ODKV01158643
[ODKV] human metagenome; G_DNA_Stool
188
111
-
Pro
GGG
[ENA]
¢þ
>WENV181243339
OFFG01061641
[OFFG] mouse gut metagenome; faeces
118
41
-
Pro
GGG
[ENA]
¢þ
>WENV181248637
OFFL01025230
[OFFL] mouse gut metagenome; faeces
170
93
-
Pro
GGG
[ENA]
¢þ
>WENV181873117
OGWZ01024546
[OGWZ] human gut metagenome; faeces
108
31
-
Pro
GGG
[ENA]
¢þ
>WENV181942217
OGYY01075701
[OGYY] human gut metagenome; faeces
469
546
+
Pro
GGG
[ENA]
¢þ
>WENV182883982
OKSB01090686
[OKSB] human gut metagenome; faeces
549
472
-
Pro
GGG
[ENA]
¢þ
>WENV183191578
OLPR01016107
[OLPR] human gut metagenome; faeces
583
506
-
Pro
GGG
[ENA]
¢þ
>WENV183281395
OLSB01093912
[OLSB] human gut metagenome; faeces
147
70
-
Pro
GGG
[ENA]
¢þ
>WENV183331344
OLWB01111934
[OLWB] human gut metagenome; faeces
392
315
-
Pro
GGG
[ENA]
¢þ
>WENV170003338
AGTN01304006
[AGTN] bioreactor metagenome; poplar biomass
900
823
-
Pro
GGG
[ENA]
¢þ
>WENV170563970
CZCB01039885
[CZCB] anaerobic digester metagenome; anaerobic digester
1006
929
-
Pro
GGG
[ENA]
¢þ
>WENV170676475
LDZS01000006
[LDZS] terrestrial metagenome; oil reservoir sample K3
10312
10389
+
Pro
GGG
[ENA]
¢þ
>WENV170677391
LDZT01005262
[LDZT] terrestrial metagenome; oil reservoir sample SB1
29042
29119
+
Pro
GGG
[ENA]
¢þ
>WENV170677441
LDZT01005403
[LDZT] terrestrial metagenome; oil reservoir sample SB1
4996
4919
-
Pro
GGG
[ENA]
¢þ
>WENV170677832
LDZT01009585
[LDZT] terrestrial metagenome; oil reservoir sample SB1
2144
2218
+
Pro
GGG
[ENA]
¢þ
>WENV170679082
LDZU01007173
[LDZU] terrestrial metagenome; oil reservoir sample SB2
1182
1259
+
Pro
GGG
[ENA]
¢þ
>WENV170679245
LDZU01009105
[LDZU] terrestrial metagenome; oil reservoir sample SB2
2877
2954
+
Pro
GGG
[ENA]
¢þ
>WENV170679254
LDZU01009197
[LDZU] terrestrial metagenome; oil reservoir sample SB2
56364
56287
-
Pro
GGG
[ENA]
¢þ
>WENV170685219
LFRM01078876
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2495
2418
-
Pro
GGG
[ENA]
¢þ
>WENV170716694
LSQX01008223
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3637
3714
+
Pro
GGG
[ENA]
¢þ
>WENV170726537
LSQX01384725
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
36553
36476
-
Pro
GGG
[ENA]
¢þ
>WENV170968925
MTKW01016914
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
996
1073
+
Pro
GGG
[ENA]
¢þ
>C181058761
CP022121
Bacillota
Dehalobacterium formicoaceticum DMC [CP022121]
2666485
2666562
+
Pro
GGG
-
¡û
>W09108836
ABTQ01000010
Bacillota
Desulfofarcimen acetoxidans DSM 771 [ABTQ]
28616
28693
+
Pro
GGG
[ENA]
¡û
>W09135905
BAAC01000065
Bacillota
Pelotomaculum thermopropionicum SI [BAAC]
7892
7969
+
Pro
GGG
[ENA]
¡û
>W141702109
JMLG01000005
Bacillota
Desulfofundulus thermocisternus DSM 10259 [JMLG]
77463
77386
-
Pro
GGG
[ENA]
¡û
>W1911661964
QFFZ01000019
Bacillota
Pelotomaculum propionicicum MGP [QFFZ]
14978
15055
+
Pro
GGG
[ENA]
¡û
>W1911662032
QFGA01000001
Bacillota
Pelotomaculum schinkii HH [QFGA]
644985
644908
-
Pro
GGG
[ENA]
¡û
>W1911662050
QFGB01000007
Bacillota
Pelotomaculum sp. FP [QFGB]
98367
98290
-
Pro
GGG
[ENA]
¡û
>C10104809
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
1432533
1432610
+
Pro
GGG
[Ensembl]
¡û
>C11107110
CP002770
Bacillota
Desulfofundulus kuznetsovii DSM 6115 [CP002770]
1619619
1619542
-
Pro
GGG
[Ensembl]
¡û
>C11120659
CP002547
Bacillota
Syntrophobotulus glycolicus DSM 8271 [CP002547]
1728164
1728087
-
Pro
GGG
[Ensembl]
¡û
>W1511429888
JUEB01000009
Bacillota
Peptococcaceae bacterium BICA1-7 [JUEB]
288867
288944
+
Pro
GGG
[ENA]
¡û
>W1511429998
JUED01000024
Bacillota
Desulfotomaculum sp. BICA1-6 [JUED]
4132
4209
+
Pro
GGG
[ENA]
¡û
>W1511564196
LADN01000059
Bacillota
Peptococcaceae bacterium BRH_c4a [LADN]
7201
7124
-
Pro
GGG
[ENA]
¡û
>W1511564253
LADO01000059
Bacillota
Peptococcaceae bacterium BRH_c4b [LADO]
60817
60740
-
Pro
GGG
[ENA]
¡û
>W1511564296
LADP01000034
Bacillota
Peptococcaceae bacterium BRH_c8a [LADP]
10920
10997
+
Pro
GGG
[ENA]
¡û
>W121010887
AGJQ01000010
Bacillota
Desulfoscipio gibsoniae DSM 7213 [AGJQ]
86313
86236
-
Pro
GGG
[ENA]
¡û
>W1610073906
BCWE01000026
Bacillota
Desulfolucanica intricata intricatum [BCWE]
754
677
-
Pro
GGG
[ENA]
¡û
>C131002667
CP003273
Bacillota
Desulfoscipio gibsoniae DSM 7213 [CP003273]
2445246
2445169
-
Pro
GGG
[Ensembl]
¡û
>W1610613549
LGFZ01000017
Bacillota
Desulfotomaculum sp. 46_296 [LGFZ]
29042
29119
+
Pro
GGG
[ENA]
¡û
>W1610613738
LGGF01000022
Bacillota
Desulfotomaculum sp. 46_80 [LGGF]
4996
4919
-
Pro
GGG
[ENA]
¡û
>W1610614139
LGGU01000004
Bacillota
Desulfofundulus kuznetsovii [LGGU]
56364
56287
-
Pro
GGG
[ENA]
¡û
>W1710071024
BCWE01000026
Bacillota
Desulfolucanica intricata intricatum [BCWE]
754
677
-
Pro
GGG
[ENA]
¡û
>W1710562346
FOOX01000001
Bacillota
Desulfotruncus arcticus arcticum [FOOX]
278500
278577
+
Pro
GGG
[ENA]
¡û
>W1710574781
FOYM01000002
Bacillota
Desulfoscipio geothermicus geothermicum [FOYM]
177989
178066
+
Pro
GGG
[ENA]
¡û
>W1710583550
FQUW01000053
Bacillota
Desulfofundulus australicus DSM 11792 [FQUW]
3746
3823
+
Pro
GGG
[ENA]
¡û
>W1710588603
FQZM01000084
Bacillota
Desulfofundulus thermosubterraneus DSM 16057 [FQZM]
164
241
+
Pro
GGG
[ENA]
¡û
>W1710734721
LGFZ01000017
Bacillota
Desulfotomaculum sp. 46_296 [LGFZ]
29042
29119
+
Pro
GGG
[ENA]
¡û
>W1710734891
LGGF01000022
Bacillota
Desulfotomaculum sp. 46_80 [LGGF]
4996
4919
-
Pro
GGG
[ENA]
¡û
>W1710735222
LGGU01000004
Bacillota
Desulfofundulus kuznetsovii [LGGU]
56364
56287
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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