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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.126932 (14 seq.)
>C021079
AP008231
Cyanobacteriota
Synechococcus elongatus PCC 6301 [AP008231]
199481
199562
+
Leu
GAG
[Ensembl]
¡û
>C021158
CP000100
Cyanobacteriota
Synechococcus elongatus PCC 7942 = FACHB-805 [CP000100]
1421319
1421238
-
Leu
GAG
[Ensembl]
¡û
>WENV181852821
OGWH01004434
[OGWH] freshwater metagenome; freshwater
468
385
-
Leu
GAG
[ENA]
¢þ
>WENV181855485
OGWL01023945
[OGWL] freshwater metagenome; freshwater
413
330
-
Leu
GAG
[ENA]
¢þ
>WENV170315123
CESO01069092
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
154
235
+
Leu
GAG
[ENA]
¢þ
>C191099561
CP033061
Cyanobacteriota
Synechococcus elongatus UTEX 3055 [CP033061]
2465934
2466015
+
Leu
GAG
-
¡û
>W09101119
AADZ01000001
Cyanobacteriota
Synechococcus elongatus PCC 7942 [AADZ]
709940
709859
-
Leu
GAG
[ENA]
¡û
>W1810521687
QCIE01000012
Cyanobacteriota
Prochlorococcus sp. AG-402-K05 [QCIE]
6702
6783
+
Leu
GAG
[ENA]
¡û
>W1810529752
QCVA01000003
Cyanobacteriota
Synechococcus sp. AG-683-A22 [QCVA]
16430
16511
+
Leu
GAG
[ENA]
¡û
>W1810529831
QCVD01000021
Cyanobacteriota
Synechococcus sp. AG-683-C23 [QCVD]
24485
24568
+
Leu
GAG
[ENA]
¡û
>W1810529974
QCVM01000001
Cyanobacteriota
Synechococcus sp. AG-686-B21 [QCVM]
91863
91944
+
Leu
GAG
[ENA]
¡û
>W1810530012
QCVN01000019
Cyanobacteriota
Synechococcus sp. AG-686-C21 [QCVN]
11744
11663
-
Leu
GAG
[ENA]
¡û
>C151009155
CP006471
Cyanobacteriota
Synechococcus elongatus UTEX 2973 [CP006471]
1843147
1843228
+
Leu
GAG
[Ensembl]
¡û
>C151104949
LN847356
Cyanobacteriota
Synechococcus sp. WH 8103 [LN847356]
339528
339610
+
Leu
GAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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