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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.126986 (76 seq.)
>W1710923941
LOCN01000009
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
29770
29686
-
Leu
TAG
[ENA]
¡û
>W1710923943
LOCN01000009
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
29450
29366
-
Leu
TAG
[ENA]
¡û
>W1710923946
LOCN01000009
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
29094
29010
-
Leu
TAG
[ENA]
¡û
>W1710923967
LOCN01000027
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
166
82
-
Leu
TAG
[ENA]
¡û
>W1710923976
LOCN01000036
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
45075
45159
+
Leu
TAG
[ENA]
¡û
>W131241480
BARX01000004
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
180366
180282
-
Leu
TAG
[ENA]
¡û
>W131241498
BARX01000016
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
44524
44608
+
Leu
TAG
[ENA]
¡û
>W131241502
BARX01000016
Gammaproteobacteria
Agarivorans albus MKT 106 [BARX]
45160
45244
+
Leu
TAG
[ENA]
¡û
>w027946
ABCQ01000024
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
17553
17467
-
Leu
TAG
[ENA]
¡û
>w027892
ABCQ01000003
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
227660
227574
-
Leu
TAG
[ENA]
¡û
>w027880
ABCQ01000001
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
179291
179377
+
Leu
TAG
[ENA]
¡û
>w027877
ABCQ01000001
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
178935
179021
+
Leu
TAG
[ENA]
¡û
>w027875
ABCQ01000001
Gammaproteobacteria
Moritella sp. PE36 [ABCQ]
178626
178712
+
Leu
TAG
[ENA]
¡û
>WENV183707624
PDWI01009447
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
10753
10669
-
Leu
TAG
[ENA]
¢þ
>WENV183718672
PDWJ01005770
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
8531
8447
-
Leu
TAG
[ENA]
¢þ
>WENV170024700
BCQL01101999
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
630
546
-
Leu
TAG
[ENA]
¢þ
>WENV170025426
BCQL01331647
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
221
137
-
Leu
TAG
[ENA]
¢þ
>C181204172
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
131014
131098
+
Leu
TAG
-
¡û
>C181204202
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
3639120
3639036
-
Leu
TAG
-
¡û
>C181204204
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
3638816
3638732
-
Leu
TAG
-
¡û
>C181204207
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
3638460
3638376
-
Leu
TAG
-
¡û
>C181204232
LS483250
Gammaproteobacteria
Moritella yayanosii DB21MT 5 [LS483250]
2941965
2941881
-
Leu
TAG
-
¡û
>W1910178250
BJEQ01000001
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
249640
249724
+
Leu
TAG
[ENA]
¡û
>W1910178254
BJEQ01000001
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
250280
250364
+
Leu
TAG
[ENA]
¡û
>W1910178302
BJEQ01000029
Gammaproteobacteria
Agarivorans sp. Toyoura001 [BJEQ]
21381
21465
+
Leu
TAG
[ENA]
¡û
>W1910237576
FPLE01000067
Gammaproteobacteria
Moritella viscosa [FPLE]
78646
78730
+
Leu
TAG
[ENA]
¡û
>W1910237578
FPLE01000067
Gammaproteobacteria
Moritella viscosa [FPLE]
78949
79033
+
Leu
TAG
[ENA]
¡û
>W1910237581
FPLE01000067
Gammaproteobacteria
Moritella viscosa [FPLE]
79291
79375
+
Leu
TAG
[ENA]
¡û
>W1910237617
FPLE01000092
Gammaproteobacteria
Moritella viscosa [FPLE]
106739
106824
+
Leu
TAG
[ENA]
¡û
>W1910237618
FPLE01000093
Gammaproteobacteria
Moritella viscosa [FPLE]
5
89
+
Leu
TAG
[ENA]
¡û
>W1910237660
FPLF01000070
Gammaproteobacteria
Moritella viscosa [FPLF]
265
349
+
Leu
TAG
[ENA]
¡û
>W1910237685
FPLF01000100
Gammaproteobacteria
Moritella viscosa [FPLF]
5
89
+
Leu
TAG
[ENA]
¡û
>W1910237724
FPLG01000082
Gammaproteobacteria
Moritella viscosa [FPLG]
78634
78718
+
Leu
TAG
[ENA]
¡û
>W1910237726
FPLG01000082
Gammaproteobacteria
Moritella viscosa [FPLG]
78937
79021
+
Leu
TAG
[ENA]
¡û
>W1910237751
FPLG01000102
Gammaproteobacteria
Moritella viscosa [FPLG]
40440
40524
+
Leu
TAG
[ENA]
¡û
>W1910282834
FRDR01000113
Gammaproteobacteria
Moritella viscosa [FRDR]
107156
107240
+
Leu
TAG
[ENA]
¡û
>W1910282867
FRDS01000072
Gammaproteobacteria
Moritella viscosa [FRDS]
78700
78784
+
Leu
TAG
[ENA]
¡û
>W1910282869
FRDS01000072
Gammaproteobacteria
Moritella viscosa [FRDS]
79003
79087
+
Leu
TAG
[ENA]
¡û
>W1910282872
FRDS01000072
Gammaproteobacteria
Moritella viscosa [FRDS]
79345
79429
+
Leu
TAG
[ENA]
¡û
>W1910282903
FRDS01000105
Gammaproteobacteria
Moritella viscosa [FRDS]
5
89
+
Leu
TAG
[ENA]
¡û
>W1910283024
FRDU01000076
Gammaproteobacteria
Moritella viscosa [FRDU]
78602
78686
+
Leu
TAG
[ENA]
¡û
>W1910283026
FRDU01000076
Gammaproteobacteria
Moritella viscosa [FRDU]
78905
78989
+
Leu
TAG
[ENA]
¡û
>W1910283029
FRDU01000076
Gammaproteobacteria
Moritella viscosa [FRDU]
79247
79331
+
Leu
TAG
[ENA]
¡û
>W1910283039
FRDU01000088
Gammaproteobacteria
Moritella viscosa [FRDU]
17807
17723
-
Leu
TAG
[ENA]
¡û
>W1910283095
FRDV01000086
Gammaproteobacteria
Moritella viscosa [FRDV]
78717
78801
+
Leu
TAG
[ENA]
¡û
>W1910283099
FRDV01000087
Gammaproteobacteria
Moritella viscosa [FRDV]
275
359
+
Leu
TAG
[ENA]
¡û
>W1910283115
FRDV01000098
Gammaproteobacteria
Moritella viscosa [FRDV]
1309
1225
-
Leu
TAG
[ENA]
¡û
>W1910283142
FRDV01000129
Gammaproteobacteria
Moritella viscosa [FRDV]
40493
40577
+
Leu
TAG
[ENA]
¡û
>W1910283177
FRDW01000043
Gammaproteobacteria
Moritella viscosa [FRDW]
78833
78917
+
Leu
TAG
[ENA]
¡û
>W1910283179
FRDW01000043
Gammaproteobacteria
Moritella viscosa [FRDW]
79136
79220
+
Leu
TAG
[ENA]
¡û
>W1910283182
FRDW01000043
Gammaproteobacteria
Moritella viscosa [FRDW]
79478
79562
+
Leu
TAG
[ENA]
¡û
>W1910283194
FRDW01000049
Gammaproteobacteria
Moritella viscosa [FRDW]
18014
17930
-
Leu
TAG
[ENA]
¡û
>W1910283218
FRDW01000058
Gammaproteobacteria
Moritella viscosa [FRDW]
40539
40623
+
Leu
TAG
[ENA]
¡û
>W1810157570
PJCA01000032
Gammaproteobacteria
Moritella sp. Urea-trap-13 [PJCA]
16940
16856
-
Leu
TAG
[ENA]
¡û
>W1810157578
PJCA01000034
Gammaproteobacteria
Moritella sp. Urea-trap-13 [PJCA]
75033
75117
+
Leu
TAG
[ENA]
¡û
>W1810157580
PJCA01000034
Gammaproteobacteria
Moritella sp. Urea-trap-13 [PJCA]
75339
75423
+
Leu
TAG
[ENA]
¡û
>W1810157583
PJCA01000034
Gammaproteobacteria
Moritella sp. Urea-trap-13 [PJCA]
75685
75769
+
Leu
TAG
[ENA]
¡û
>W1810724849
QOCB01000133
Gammaproteobacteria
Psychromonas sp. B3M02 [QOCB]
14958
15042
+
Leu
TAG
[ENA]
¡û
>W1810724852
QOCB01000133
Gammaproteobacteria
Psychromonas sp. B3M02 [QOCB]
15366
15450
+
Leu
TAG
[ENA]
¡û
>W1810724856
QOCB01000144
Gammaproteobacteria
Psychromonas sp. B3M02 [QOCB]
1682
1766
+
Leu
TAG
[ENA]
¡û
>C151103115
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
4435445
4435529
+
Leu
TAG
[Ensembl]
¡û
>C151103117
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
4435747
4435831
+
Leu
TAG
[Ensembl]
¡û
>C151103120
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
4436089
4436173
+
Leu
TAG
[Ensembl]
¡û
>C151103137
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
4976574
4976490
-
Leu
TAG
[Ensembl]
¡û
>C151103178
LN554852
Gammaproteobacteria
Moritella viscosa [LN554852]
3465527
3465443
-
Leu
TAG
[Ensembl]
¡û
>C161049613
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
30893
30977
+
Leu
TAG
-
¡û
>C161049629
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1221896
1221980
+
Leu
TAG
-
¡û
>C161049633
CP013021
Gammaproteobacteria
Agarivorans gilvus WH0801 [CP013021]
1222520
1222604
+
Leu
TAG
-
¡û
>W121102702
AKXQ01000025
Gammaproteobacteria
Moritella dasanensis ArB 0140 [AKXQ]
76395
76479
+
Leu
TAG
[ENA]
¡û
>W121102708
AKXQ01000030
Gammaproteobacteria
Moritella dasanensis ArB 0140 [AKXQ]
58277
58361
+
Leu
TAG
[ENA]
¡û
>W121102725
AKXQ01000047
Gammaproteobacteria
Moritella dasanensis ArB 0140 [AKXQ]
11382
11298
-
Leu
TAG
[ENA]
¡û
>W1610781542
LOCN01000009
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
29770
29686
-
Leu
TAG
[ENA]
¡û
>W1610781544
LOCN01000009
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
29450
29366
-
Leu
TAG
[ENA]
¡û
>W1610781547
LOCN01000009
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
29094
29010
-
Leu
TAG
[ENA]
¡û
>W1610781568
LOCN01000027
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
166
82
-
Leu
TAG
[ENA]
¡û
>W1610781577
LOCN01000036
Gammaproteobacteria
Moritella sp. JT01 [LOCN]
45075
45159
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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