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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127136 (70 seq.)
>W1711433609
MIMI01000057
Bacillota
Limosilactobacillus reuteri [MIMI]
384
459
+
His
GTG
[ENA]
¡û
>W1711433627
MIMI01000082
Bacillota
Limosilactobacillus reuteri [MIMI]
10485
10560
+
His
GTG
[ENA]
¡û
>C171034079
CP014912
Bacillota
Secundilactobacillus paracollinoides TMW 1.1979 [CP014912]
490916
490993
+
His
GTG
-
¡û
>C171034125
CP014912
Bacillota
Secundilactobacillus paracollinoides TMW 1.1979 [CP014912]
3066809
3066734
-
His
GTG
-
¡û
>C171034202
CP014915
Bacillota
Secundilactobacillus paracollinoides TMW 1.1994 [CP014915]
1678183
1678108
-
His
GTG
-
¡û
>C171034209
CP014915
Bacillota
Secundilactobacillus paracollinoides TMW 1.1994 [CP014915]
208373
208296
-
His
GTG
-
¡û
>C171034210
CP014924
Bacillota
Secundilactobacillus paracollinoides TMW 1.1995 [CP014924]
494208
494285
+
His
GTG
-
¡û
>C171034256
CP014924
Bacillota
Secundilactobacillus paracollinoides TMW 1.1995 [CP014924]
3265343
3265268
-
His
GTG
-
¡û
>WENV181258603
OFFV01001070
[OFFV] mouse gut metagenome; faeces
2903
2828
-
His
GTG
[ENA]
¢þ
>WENV182260685
OHTJ01014795
[OHTJ] human gut metagenome; feces
353
278
-
His
GTG
[ENA]
¢þ
>W141237664
BBJM01000021
Bacillota
Secundilactobacillus oryzae [BBJM]
39015
38940
-
His
GTG
[ENA]
¡û
>WENV182891823
OKSH01005032
[OKSH] human gut metagenome; faeces
4965
4890
-
His
GTG
[ENA]
¢þ
>WENV183772093
PPYF01007860
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1813
1738
-
His
GTG
[ENA]
¢þ
>W1910177192
BJDO01000061
Bacillota
Secundilactobacillus hailunensis 887-11 [BJDO]
859
934
+
His
GTG
[ENA]
¡û
>W1911631865
PUFJ01000036
Bacillota
Secundilactobacillus silagei JCM 19001 DSM 27022 [PUFJ]
159504
159429
-
His
GTG
[ENA]
¡û
>W1911632128
PUFO01000081
Bacillota
Secundilactobacillus malefermentans ATCC 49373 [PUFO]
1939
1864
-
His
GTG
[ENA]
¡û
>W11184777
BACN01000033
Bacillota
Secundilactobacillus malefermentans KCTC 3548 [BACN]
788
863
+
His
GTG
[ENA]
¡û
>W1610031292
AYYR01000078
Bacillota
Secundilactobacillus collinoides DSM 20515 = JCM 1123 [AYYR]
25226
25303
+
His
GTG
[ENA]
¡û
>W1610031299
AYYR01000094
Bacillota
Secundilactobacillus collinoides DSM 20515 = JCM 1123 [AYYR]
47596
47521
-
His
GTG
[ENA]
¡û
>W1610032259
AYZM01000084
Bacillota
Secundilactobacillus similis DSM 23365 = JCM 2765 [AYZM]
231
306
+
His
GTG
[ENA]
¡û
>W1610032267
AYZM01000125
Bacillota
Secundilactobacillus similis DSM 23365 = JCM 2765 [AYZM]
80634
80711
+
His
GTG
[ENA]
¡û
>W1610033415
AZCX01000012
Bacillota
Secundilactobacillus kimchicus JCM 15530 [AZCX]
45490
45567
+
His
GTG
[ENA]
¡û
>W1610035011
AZEE01000027
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [AZEE]
331795
331872
+
His
GTG
[ENA]
¡û
>W1610035019
AZEE01000028
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [AZEE]
778
853
+
His
GTG
[ENA]
¡û
>W1610036237
AZFD01000180
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [AZFD]
3946
3869
-
His
GTG
[ENA]
¡û
>W1610037903
AZGJ01000117
Bacillota
Secundilactobacillus malefermentans DSM 5705 = KCTC 3548 [AZGJ]
748
823
+
His
GTG
[ENA]
¡û
>W1610043882
BBAD01000006
Bacillota
Secundilactobacillus similis DSM 23365 = JCM 2765 [BBAD]
62741
62664
-
His
GTG
[ENA]
¡û
>W1610043916
BBAD01000102
Bacillota
Secundilactobacillus similis DSM 23365 = JCM 2765 [BBAD]
752
827
+
His
GTG
[ENA]
¡û
>W1610044053
BBAG01000020
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [BBAG]
30115
30038
-
His
GTG
[ENA]
¡û
>W1610044096
BBAG01000155
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [BBAG]
730
805
+
His
GTG
[ENA]
¡û
>W1610045001
BBAZ01000001
Bacillota
Secundilactobacillus oryzae JCM 18671 [BBAZ]
739
814
+
His
GTG
[ENA]
¡û
>W1610049059
BBEQ01000042
Bacillota
Secundilactobacillus collinoides DSM 20515 = JCM 1123 [BBEQ]
729
804
+
His
GTG
[ENA]
¡û
>W1610049062
BBEQ01000043
Bacillota
Secundilactobacillus collinoides DSM 20515 = JCM 1123 [BBEQ]
3621
3544
-
His
GTG
[ENA]
¡û
>W1610049897
BBFJ01000001
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [BBFJ]
266475
266398
-
His
GTG
[ENA]
¡û
>W1610049905
BBFJ01000002
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [BBFJ]
733
808
+
His
GTG
[ENA]
¡û
>W1610049987
BBFK01000008
Bacillota
Secundilactobacillus kimchicus JCM 15530 [BBFK]
112990
112913
-
His
GTG
[ENA]
¡û
>W1610049998
BBFK01000028
Bacillota
Secundilactobacillus kimchicus JCM 15530 [BBFK]
407
332
-
His
GTG
[ENA]
¡û
>W1610050027
BBFL01000003
Bacillota
Secundilactobacillus silagei JCM 19001 [BBFL]
158086
158011
-
His
GTG
[ENA]
¡û
>W1610550915
JYDC01000048
Bacillota
Secundilactobacillus collinoides [JYDC]
43871
43796
-
His
GTG
[ENA]
¡û
>W1610550946
JYDC01000117
Bacillota
Secundilactobacillus collinoides [JYDC]
17710
17787
+
His
GTG
[ENA]
¡û
>W1710028244
AYYR01000078
Bacillota
Secundilactobacillus collinoides DSM 20515 = JCM 1123 [AYYR]
25226
25303
+
His
GTG
[ENA]
¡û
>W1710028251
AYYR01000094
Bacillota
Secundilactobacillus collinoides DSM 20515 = JCM 1123 [AYYR]
47596
47521
-
His
GTG
[ENA]
¡û
>W1710029186
AYZM01000084
Bacillota
Secundilactobacillus similis DSM 23365 = JCM 2765 [AYZM]
231
306
+
His
GTG
[ENA]
¡û
>W1710029194
AYZM01000125
Bacillota
Secundilactobacillus similis DSM 23365 = JCM 2765 [AYZM]
80634
80711
+
His
GTG
[ENA]
¡û
>W1710030687
AZCX01000012
Bacillota
Secundilactobacillus kimchicus JCM 15530 [AZCX]
45490
45567
+
His
GTG
[ENA]
¡û
>W1710032138
AZEE01000027
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [AZEE]
331795
331872
+
His
GTG
[ENA]
¡û
>W1710032146
AZEE01000028
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [AZEE]
778
853
+
His
GTG
[ENA]
¡û
>W1710033276
AZFD01000180
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [AZFD]
3946
3869
-
His
GTG
[ENA]
¡û
>W1710034942
AZGJ01000117
Bacillota
Secundilactobacillus malefermentans DSM 5705 = KCTC 3548 [AZGJ]
748
823
+
His
GTG
[ENA]
¡û
>W1710041042
BBAD01000006
Bacillota
Secundilactobacillus similis DSM 23365 = JCM 2765 [BBAD]
62741
62664
-
His
GTG
[ENA]
¡û
>W1710041076
BBAD01000102
Bacillota
Secundilactobacillus similis DSM 23365 = JCM 2765 [BBAD]
752
827
+
His
GTG
[ENA]
¡û
>W1710041213
BBAG01000020
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [BBAG]
30115
30038
-
His
GTG
[ENA]
¡û
>W1710041256
BBAG01000155
Bacillota
Secundilactobacillus paracollinoides DSM 15502 = JCM 11969 [BBAG]
730
805
+
His
GTG
[ENA]
¡û
>W1710042099
BBAZ01000001
Bacillota
Secundilactobacillus oryzae JCM 18671 [BBAZ]
739
814
+
His
GTG
[ENA]
¡û
>W1710045531
BBEQ01000042
Bacillota
Secundilactobacillus collinoides DSM 20515 = JCM 1123 [BBEQ]
729
804
+
His
GTG
[ENA]
¡û
>W1710045534
BBEQ01000043
Bacillota
Secundilactobacillus collinoides DSM 20515 = JCM 1123 [BBEQ]
3621
3544
-
His
GTG
[ENA]
¡û
>W1710046296
BBFJ01000001
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [BBFJ]
266475
266398
-
His
GTG
[ENA]
¡û
>W1710046304
BBFJ01000002
Bacillota
Secundilactobacillus odoratitofui DSM 19909 = JCM 15043 [BBFJ]
733
808
+
His
GTG
[ENA]
¡û
>W1710046386
BBFK01000008
Bacillota
Secundilactobacillus kimchicus JCM 15530 [BBFK]
112990
112913
-
His
GTG
[ENA]
¡û
>W1710046397
BBFK01000028
Bacillota
Secundilactobacillus kimchicus JCM 15530 [BBFK]
407
332
-
His
GTG
[ENA]
¡û
>W1710046426
BBFL01000003
Bacillota
Secundilactobacillus silagei JCM 19001 [BBFL]
158086
158011
-
His
GTG
[ENA]
¡û
>W1710058465
BCMF01000001
Bacillota
Secundilactobacillus mixtipabuli [BCMF]
194619
194696
+
His
GTG
[ENA]
¡û
>W1710058474
BCMF01000002
Bacillota
Secundilactobacillus mixtipabuli [BCMF]
297245
297170
-
His
GTG
[ENA]
¡û
>W1710058553
BCMG01000006
Bacillota
Secundilactobacillus silagei [BCMG]
158147
158072
-
His
GTG
[ENA]
¡û
>W1710058632
BCMH01000029
Bacillota
Secundilactobacillus pentosiphilus IWT140 [BCMH]
9381
9306
-
His
GTG
[ENA]
¡û
>W1710058685
BCMI01000015
Bacillota
Secundilactobacillus pentosiphilus IWT25 [BCMI]
852
927
+
His
GTG
[ENA]
¡û
>W1710058714
BCMJ01000004
Bacillota
Secundilactobacillus silagincola IWT5 [BCMJ]
70820
70897
+
His
GTG
[ENA]
¡û
>W1710058737
BCMJ01000013
Bacillota
Secundilactobacillus silagincola IWT5 [BCMJ]
1067
1142
+
His
GTG
[ENA]
¡û
>W1710661188
JYDC01000048
Bacillota
Secundilactobacillus collinoides [JYDC]
43871
43796
-
His
GTG
[ENA]
¡û
>W1710661219
JYDC01000117
Bacillota
Secundilactobacillus collinoides [JYDC]
17710
17787
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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