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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127155 (29 seq.)
>A171000285
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
565164
565087
-
Arg
TCT
-
¡û
>A171001560
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
594
519
-
Arg
TCT
-
¡û
>A171002328
CP002792
Euryarchaeota
Methanothermococcus okinawensis IH1 [CP002792]
540160
540235
+
Arg
TCT
-
¡û
>A171002496
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
328101
328178
+
Arg
TCT
-
¡û
>WENV180287352
OBIK01026745
[OBIK] hydrothermal vent metagenome; sea water
284
359
+
Arg
TCT
[ENA]
¢þ
>WENV180332325
OBLD01000078
[OBLD] metagenome; water
2880
2956
+
Arg
TCT
[ENA]
¢þ
>WENV180332353
OBLD01000617
[OBLD] metagenome; water
393
317
-
Arg
TCT
[ENA]
¢þ
>WENV180581673
OCMK01034822
[OCMK] metagenome; diffuse fluid
107
183
+
Arg
TCT
[ENA]
¢þ
>WENV180582114
OCMO01001174
[OCMO] metagenome; diffuse fluid
1193
1269
+
Arg
TCT
[ENA]
¢þ
>WENV181206242
OFAT01001276
[OFAT] metagenome; hydrothermal vent
368
292
-
Arg
TCT
[ENA]
¢þ
>WENV181206611
OFAW01000509
[OFAW] metagenome; hydrothermal vent
3903
3827
-
Arg
TCT
[ENA]
¢þ
>WENV181207072
OFAY01000324
[OFAY] metagenome; hydrothermal vent
5118
5042
-
Arg
TCT
[ENA]
¢þ
>WENV181207831
OFBA01000600
[OFBA] metagenome; hydrothermal vent
1272
1348
+
Arg
TCT
[ENA]
¢þ
>WENV181208211
OFBB01000576
[OFBB] metagenome; hydrothermal vent
1270
1346
+
Arg
TCT
[ENA]
¢þ
>WENV181208568
OFBC01000051
[OFBC] metagenome; hydrothermal vent
17155
17079
-
Arg
TCT
[ENA]
¢þ
>WENV181223807
OFDD01000480
[OFDD] metagenome; hydrothermal vent
3885
3809
-
Arg
TCT
[ENA]
¢þ
>WENV181224473
OFDF01001894
[OFDF] metagenome; hydrothermal vent
1236
1312
+
Arg
TCT
[ENA]
¢þ
>WENV181224617
OFDG01000126
[OFDG] metagenome; hydrothermal vent
1998
2074
+
Arg
TCT
[ENA]
¢þ
>WENV181225381
OFDI01000569
[OFDI] metagenome; hydrothermal vent
3880
3804
-
Arg
TCT
[ENA]
¢þ
>At1015
CP000743
Euryarchaeota
Methanococcus aeolicus Nankai-3 [CP000743]
1029211
1029285
+
Arg
TCT
[Ensembl]
¡û
>At1071
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
1283171
1283094
-
Arg
TCT
[Ensembl]
¡û
>At1097
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
1300479
1300556
+
Arg
TCT
[Ensembl]
¡û
>At1128
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
335487
335564
+
Arg
TCT
[Ensembl]
¡û
>W1610000328
AAWI01000002
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
74203
74126
-
Arg
TCT
[ENA]
¡û
>W1610000363
AAWX01000002
Euryarchaeota
Methanococcus vannielii SB [AAWX]
126754
126828
+
Arg
TCT
[ENA]
¡û
>W1610000427
AAZL01000001
Euryarchaeota
Methanococcus aeolicus Nankai-3 [AAZL]
1364497
1364573
+
Arg
TCT
[ENA]
¡û
>W1610000478
AAZM01000002
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
473332
473255
-
Arg
TCT
[ENA]
¡û
>W1610000604
ABHB01000001
Euryarchaeota
Methanococcus voltae A3 [ABHB]
1094372
1094297
-
Arg
TCT
[ENA]
¡û
>W1610018889
AQXV01000046
Euryarchaeota
Methanothermococcus thermolithotrophicus DSM 2095 [AQXV]
41687
41764
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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