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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127158 (32 seq.)
>A171000274
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
1061183
1061108
-
Ile
GAT
-
¡û
>A171001532
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
1255755
1255830
+
Ile
GAT
-
¡û
>A171002354
CP002792
Euryarchaeota
Methanothermococcus okinawensis IH1 [CP002792]
516094
516019
-
Ile
GAT
-
¡û
>A171002503
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
1582888
1582963
+
Ile
GAT
-
¡û
>WENV180287175
OBIK01000671
[OBIK] hydrothermal vent metagenome; sea water
1357
1434
+
Ile
GAT
[ENA]
¢þ
>WENV180287728
OBIL01001215
[OBIL] metagenome; hydrothermal vent
316
241
-
Ile
GAT
[ENA]
¢þ
>WENV180316934
OBKJ01002027
[OBKJ] metagenome; hydrothermal vent
210
135
-
Ile
GAT
[ENA]
¢þ
>WENV180332327
OBLD01000088
[OBLD] metagenome; water
136
211
+
Ile
GAT
[ENA]
¢þ
>WENV181206277
OFAT01002306
[OFAT] metagenome; hydrothermal vent
1073
998
-
Ile
GAT
[ENA]
¢þ
>WENV181206753
OFAW01004118
[OFAW] metagenome; hydrothermal vent
103
178
+
Ile
GAT
[ENA]
¢þ
>WENV181207121
OFAY01000882
[OFAY] metagenome; hydrothermal vent
1328
1253
-
Ile
GAT
[ENA]
¢þ
>WENV181207657
OFAZ01010352
[OFAZ] metagenome; hydrothermal vent
5
82
+
Ile
GAT
[ENA]
¢þ
>WENV181208256
OFBB01001496
[OFBB] metagenome; hydrothermal vent
130
55
-
Ile
GAT
[ENA]
¢þ
>WENV181208666
OFBC01001248
[OFBC] metagenome; hydrothermal vent
179
104
-
Ile
GAT
[ENA]
¢þ
>WENV181223839
OFDD01000988
[OFDD] metagenome; hydrothermal vent
842
765
-
Ile
GAT
[ENA]
¢þ
>WENV181224273
OFDE01003884
[OFDE] metagenome; hydrothermal vent
113
36
-
Ile
GAT
[ENA]
¢þ
>WENV181224482
OFDF01002113
[OFDF] metagenome; hydrothermal vent
986
911
-
Ile
GAT
[ENA]
¢þ
>WENV181224651
OFDG01000487
[OFDG] metagenome; hydrothermal vent
3157
3232
+
Ile
GAT
[ENA]
¢þ
>WENV181225360
OFDI01000393
[OFDI] metagenome; hydrothermal vent
1527
1602
+
Ile
GAT
[ENA]
¢þ
>At0955
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
873763
873686
-
Ile
GAT
[Ensembl]
¡û
>At1062
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
27772
27698
-
Ile
GAT
[Ensembl]
¡û
>At1085
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
769262
769336
+
Ile
GAT
[Ensembl]
¡û
>At1136
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
1497882
1497956
+
Ile
GAT
[Ensembl]
¡û
>At1159
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
882075
882149
+
Ile
GAT
[Ensembl]
¡û
>W1910067421
BFAX01000001
Euryarchaeota
Methanofervidicoccus abyssi HHB [BFAX]
174663
174586
-
Ile
GAT
[ENA]
¡û
>W1610000337
AAWI01000004
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
97878
97953
+
Ile
GAT
[ENA]
¡û
>W1610000349
AAWX01000001
Euryarchaeota
Methanococcus vannielii SB [AAWX]
618645
618720
+
Ile
GAT
[ENA]
¡û
>W1610000463
AAZM01000001
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
219448
219373
-
Ile
GAT
[ENA]
¡û
>W1610000587
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
161956
161881
-
Ile
GAT
[ENA]
¡û
>W1610000608
ABHB01000001
Euryarchaeota
Methanococcus voltae A3 [ABHB]
318988
318913
-
Ile
GAT
[ENA]
¡û
>W1610002141
AEDA01000008
Euryarchaeota
Methanothermococcus okinawensis IH1 [AEDA]
51229
51154
-
Ile
GAT
[ENA]
¡û
>W1610018884
AQXV01000031
Euryarchaeota
Methanothermococcus thermolithotrophicus DSM 2095 [AQXV]
20128
20053
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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