This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127177 (14 seq.)
>A171000703
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
1741874
1741948
+
Met
CAT
-
¡û
>A171002189
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
839669
839592
-
Met
CAT
-
¡û
>A171003385
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
97207
97130
-
Met
CAT
-
¡û
>A171003891
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
1035693
1035616
-
Met
CAT
-
¡û
>A171004040
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
841259
841336
+
Met
CAT
-
¡û
>WENV170676029
LDZR01000318
[LDZR] terrestrial metagenome; oil reservoir sample K2
1911
1985
+
Met
CAT
[ENA]
¢þ
>WENV170676740
LDZS01002087
[LDZS] terrestrial metagenome; oil reservoir sample K3
69
143
+
Met
CAT
[ENA]
¢þ
>At1804
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
1640404
1640481
+
Met
CAT
[Ensembl]
¡û
>At1846
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
297339
297262
-
Met
CAT
[Ensembl]
¡û
>At1892
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
274213
274136
-
Met
CAT
[Ensembl]
¡û
>At1924
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1095166
1095243
+
Met
CAT
[Ensembl]
¡û
>W1610004946
AHVB01000075
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
33634
33711
+
Met
CAT
[ENA]
¡û
>W1610548856
JXCG01000001
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
353245
353168
-
Met
CAT
[ENA]
¡û
>W1610613052
LGFJ01000058
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
69
143
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK