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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127178 (51 seq.)
>A171000205
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
1743948
1744025
+
Glu
CTC
-
¡û
>A171000507
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
391317
391240
-
Glu
CTC
-
¡û
>A171000704
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
1797701
1797624
-
Glu
CTC
-
¡û
>A171001879
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
1842359
1842282
-
Glu
CTC
-
¡û
>A171002181
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
1727185
1727108
-
Glu
CTC
-
¡û
>A171002317
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
443781
443704
-
Glu
CTC
-
¡û
>A171002589
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
1116151
1116074
-
Glu
CTC
-
¡û
>A171002671
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1831792
1831715
-
Glu
CTC
-
¡û
>A171003270
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
1196827
1196904
+
Glu
CTC
-
¡û
>A171003329
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
759789
759712
-
Glu
CTC
-
¡û
>A171003346
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
599273
599350
+
Glu
CTC
-
¡û
>A171003800
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
249635
249558
-
Glu
CTC
-
¡û
>A171003892
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
988822
988745
-
Glu
CTC
-
¡û
>A171004049
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1917293
1917216
-
Glu
CTC
-
¡û
>A171004228
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
1043504
1043427
-
Glu
CTC
-
¡û
>A171004276
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1319133
1319210
+
Glu
CTC
-
¡û
>A171004433
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
743783
743860
+
Glu
CTC
-
¡û
>A171005886
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
1953373
1953296
-
Glu
CTC
-
¡û
>A171006359
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
1832381
1832304
-
Glu
CTC
-
¡û
>A171006476
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
2135507
2135430
-
Glu
CTC
-
¡û
>A171006583
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
1282787
1282864
+
Glu
CTC
-
¡û
>A171006645
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
962466
962543
+
Glu
CTC
-
¡û
>A171007082
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
4894
4971
+
Glu
CTC
-
¡û
>A171007501
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
1396958
1397035
+
Glu
CTC
-
¡û
>WENV180634831
OCRB01124192
[OCRB] metagenome; diffuse fluid
6
83
+
Glu
CTC
[ENA]
¢þ
>At1305
AE009439
Euryarchaeota
Methanopyrus kandleri AV19 [AE009439]
1413744
1413873
+
Glu
TTC
[Ensembl]
¡û
>At1309
AE009439
Euryarchaeota
Methanopyrus kandleri AV19 [AE009439]
1659600
1659729
+
Glu
TTC
[Ensembl]
¡û
>At1814
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
1103182
1103105
-
Glu
CTC
[Ensembl]
¡û
>At1830
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
797966
798043
+
Glu
CTC
[Ensembl]
¡û
>At1899
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
1140876
1140799
-
Glu
CTC
[Ensembl]
¡û
>At1957
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1483825
1483748
-
Glu
CTC
[Ensembl]
¡û
>WENV170675997
LDZQ01001692
[LDZQ] terrestrial metagenome; oil reservoir sample I2
413
490
+
Glu
CTC
[ENA]
¢þ
>WENV170676309
LDZR01002236
[LDZR] terrestrial metagenome; oil reservoir sample K2
21299
21376
+
Glu
CTC
[ENA]
¢þ
>WENV170676733
LDZS01002060
[LDZS] terrestrial metagenome; oil reservoir sample K3
1623
1700
+
Glu
CTC
[ENA]
¢þ
>W1910200308
FJMQ01000070
Euryarchaeota
Thermococcus litoralis [FJMQ]
832
755
-
Glu
CTC
[ENA]
¡û
>W1910229996
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
6146
6069
-
Glu
CTC
[ENA]
¡û
>W1910597280
LANF01000011
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
156957
156880
-
Glu
CTC
[ENA]
¡û
>W1910597285
LANF01000012
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
29049
28972
-
Glu
CTC
[ENA]
¡û
>W1610000707
ABSF01000006
Euryarchaeota
Thermococcus barophilus MP [ABSF]
58788
58711
-
Glu
CTC
[ENA]
¡û
>W1610000887
ABXN01000013
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
35538
35615
+
Glu
CTC
[ENA]
¡û
>W1610004947
AHVB01000075
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
80505
80582
+
Glu
CTC
[ENA]
¡û
>W1610005294
AJLF01000002
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
526892
526815
-
Glu
CTC
[ENA]
¡û
>W1610005573
AKID01000039
Euryarchaeota
Thermococcus sp. PK [AKID]
22366
22289
-
Glu
CTC
[ENA]
¡û
>W1610045080
BBBB01000011
Euryarchaeota
Thermococcus celer JCM 8558 [BBBB]
39144
39067
-
Glu
CTC
[ENA]
¡û
>W1610045163
BBBE01000004
Euryarchaeota
Thermococcus peptonophilus JCM 9653 [BBBE]
31485
31563
+
Glu
CTC
[ENA]
¡û
>W1610548853
JXCG01000001
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
303983
304060
+
Glu
CTC
[ENA]
¡û
>W1610612459
LGET01000151
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
413
490
+
Glu
CTC
[ENA]
¡û
>W1610612814
LGFD01000015
Euryarchaeota
Thermococcus sibiricus [LGFD]
21299
21376
+
Glu
CTC
[ENA]
¡û
>W1610613045
LGFJ01000031
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
1623
1700
+
Glu
CTC
[ENA]
¡û
>W1610638242
LIXN01000015
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
86
9
-
Glu
CTC
[ENA]
¡û
>W1610717911
LLYW01000005
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
111
34
-
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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