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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127184 (109 seq.)
>A171003609
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
791935
791860
-
Glu
CTC
-
¡û
>A171004351
CP008746
Euryarchaeota
Methanosarcina barkeri CM1 [CP008746]
2587148
2587223
+
Glu
CTC
-
¡û
>A171004519
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
2758107
2758184
+
Glu
CTC
-
¡û
>A171004604
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1272483
1272406
-
Glu
CTC
-
¡û
>A171004615
CP009503
Euryarchaeota
Methanosarcina sp. WWM596 [CP009503]
712866
712941
+
Glu
CTC
-
¡û
>A171004667
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
681920
681995
+
Glu
CTC
-
¡û
>A171004723
CP009505
Euryarchaeota
Methanosarcina sp. MTP4 [CP009505]
650494
650569
+
Glu
CTC
-
¡û
>A171004795
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
4412156
4412080
-
Glu
CTC
-
¡û
>A171004848
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
4353934
4353858
-
Glu
CTC
-
¡û
>A171004899
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
4803082
4803158
+
Glu
CTC
-
¡û
>A171004932
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
638814
638889
+
Glu
CTC
-
¡û
>A171004984
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
609412
609487
+
Glu
CTC
-
¡û
>A171005036
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
617721
617796
+
Glu
CTC
-
¡û
>A171005088
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
610557
610632
+
Glu
CTC
-
¡û
>A171005141
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
643414
643489
+
Glu
CTC
-
¡û
>A171005221
CP009515
Euryarchaeota
Methanosarcina lacustris Z-7289 [CP009515]
3549086
3549010
-
Glu
CTC
-
¡û
>A171005245
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
714807
714882
+
Glu
CTC
-
¡û
>A171005322
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
3848616
3848540
-
Glu
CTC
-
¡û
>A171005414
CP009520
Euryarchaeota
Methanosarcina vacuolata Z-761 [CP009520]
4062263
4062338
+
Glu
CTC
-
¡û
>A171005476
CP009524
Euryarchaeota
Methanosarcina sp. Kolksee [CP009524]
4042199
4042124
-
Glu
CTC
-
¡û
>A171005508
CP009526
Euryarchaeota
Methanosarcina barkeri str. Wiesmoor [CP009526]
716943
717018
+
Glu
CTC
-
¡û
>A171005603
CP009528
Euryarchaeota
Methanosarcina barkeri MS [CP009528]
764093
764018
-
Glu
CTC
-
¡û
>A171005618
CP009530
Euryarchaeota
Methanosarcina barkeri 227 [CP009530]
2321338
2321413
+
Glu
CTC
-
¡û
>WENV180037429
FVAA011042670
[FVAA] soil metagenome; Soil
100
25
-
Glu
CTC
[ENA]
¢þ
>WENV180346295
OBLN01057333
[OBLN] sediment metagenome; sediment
90
15
-
Glu
CTC
[ENA]
¢þ
>WENV181229951
OFEK01000139
[OFEK] activated sludge metagenome; Anaerobic digester
10587
10661
+
Glu
CTC
[ENA]
¢þ
>At1399
AE010299
Euryarchaeota
Methanosarcina acetivorans C2A [AE010299]
5042745
5042819
+
Glu
CTC
[Ensembl]
¡û
>At1473
CP000099
Euryarchaeota
Methanosarcina barkeri [CP000099]
474096
474022
-
Glu
CTC
[Ensembl]
¡û
>At1531
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
951902
951828
-
Glu
CTC
[Ensembl]
¡û
>WENV170668731
LAHQ01023100
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
2036
2110
+
Glu
CTC
[ENA]
¢þ
>WENV170670516
LAHT01030610
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
3
77
+
Glu
CTC
[ENA]
¢þ
>WENV170687873
LFRM01214605
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
45976
45899
-
Glu
CTC
[ENA]
¢þ
>WENV170723175
LSQX01257633
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
24076
24151
+
Glu
CTC
[ENA]
¢þ
>WENV170725254
LSQX01336477
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3668
3594
-
Glu
CTC
[ENA]
¢þ
>WENV170784214
MCHG01000126
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
22806
22731
-
Glu
CTC
[ENA]
¢þ
>W1910230888
FPAO01000003
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
131331
131254
-
Glu
CTC
[ENA]
¡û
>W1910569257
JJOR01000130
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
10684
10609
-
Glu
CTC
[ENA]
¡û
>W1910569305
JJOS01000066
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
10703
10628
-
Glu
CTC
[ENA]
¡û
>W1910569339
JJOT01000022
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
39518
39593
+
Glu
CTC
[ENA]
¡û
>W1910569383
JJOU01000020
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
25655
25580
-
Glu
CTC
[ENA]
¡û
>W1910569470
JJOV01000087
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
14752
14827
+
Glu
CTC
[ENA]
¡û
>W1910569486
JJOW01000092
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
18331
18256
-
Glu
CTC
[ENA]
¡û
>W1910569577
JJOX01000091
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
18331
18256
-
Glu
CTC
[ENA]
¡û
>W1910569599
JJOY01000020
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
18331
18256
-
Glu
CTC
[ENA]
¡û
>W1910569653
JJOZ01000033
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
18331
18256
-
Glu
CTC
[ENA]
¡û
>W1910569732
JJPA01000250
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
10702
10627
-
Glu
CTC
[ENA]
¡û
>W1910569779
JJPB01000133
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
9828
9903
+
Glu
CTC
[ENA]
¡û
>W1910569823
JJPC01000117
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
10796
10721
-
Glu
CTC
[ENA]
¡û
>W1910569848
JJPD01000080
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
9816
9891
+
Glu
CTC
[ENA]
¡û
>W1910569914
JJPE01000094
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
9816
9891
+
Glu
CTC
[ENA]
¡û
>W1910569958
JJPF01000044
Euryarchaeota
Methanosarcina mazei 3.F.A.2.5 [JJPF]
25436
25361
-
Glu
CTC
[ENA]
¡û
>W1910569990
JJPG01000004
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
9812
9887
+
Glu
CTC
[ENA]
¡û
>W1910570055
JJPH01000039
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
9815
9890
+
Glu
CTC
[ENA]
¡û
>W1910570095
JJPI01000012
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
10579
10504
-
Glu
CTC
[ENA]
¡û
>W1910570178
JJPJ01000074
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
10392
10317
-
Glu
CTC
[ENA]
¡û
>W1910570195
JJPK01000008
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
27216
27141
-
Glu
CTC
[ENA]
¡û
>W1910570280
JJPL01000130
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
10795
10720
-
Glu
CTC
[ENA]
¡û
>W1910570321
JJPM01000180
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
10654
10729
+
Glu
CTC
[ENA]
¡û
>W1910570394
JJPN01000156
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
25655
25580
-
Glu
CTC
[ENA]
¡û
>W1910570443
JJPO01000149
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
86848
86923
+
Glu
CTC
[ENA]
¡û
>W1910570450
JJPP01000015
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
10706
10631
-
Glu
CTC
[ENA]
¡û
>W1910570514
JJPQ01000047
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
9816
9891
+
Glu
CTC
[ENA]
¡û
>W1910570551
JJPR01000022
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
9903
9978
+
Glu
CTC
[ENA]
¡û
>W1910570624
JJPS01000117
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
20496
20421
-
Glu
CTC
[ENA]
¡û
>W1910570671
JJPT01000078
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
11389
11314
-
Glu
CTC
[ENA]
¡û
>W1910570741
JJPU01000168
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.1 [JJPU]
20496
20421
-
Glu
CTC
[ENA]
¡û
>W1910570775
JJPV01000051
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
27033
26958
-
Glu
CTC
[ENA]
¡û
>W1910570830
JJPW01000053
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
10492
10417
-
Glu
CTC
[ENA]
¡û
>W1910570896
JJPX01000172
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
10588
10513
-
Glu
CTC
[ENA]
¡û
>W1910570929
JJPY01000067
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
9829
9904
+
Glu
CTC
[ENA]
¡û
>W1910570953
JJPZ01000007
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
25615
25540
-
Glu
CTC
[ENA]
¡û
>W1910571021
JJQA01000076
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
10616
10541
-
Glu
CTC
[ENA]
¡û
>W1910571071
JJQB01000040
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
12812
12737
-
Glu
CTC
[ENA]
¡û
>W1910571149
JJQC01000166
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
10611
10536
-
Glu
CTC
[ENA]
¡û
>W1910571158
JJQD01000024
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
10692
10617
-
Glu
CTC
[ENA]
¡û
>W1910571219
JJQE01000081
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
25436
25361
-
Glu
CTC
[ENA]
¡û
>W1910571258
JJQF01000032
Euryarchaeota
Methanosarcina mazei 1.H.A.0.1 [JJQF]
10614
10539
-
Glu
CTC
[ENA]
¡û
>W1910571315
JJQG01000062
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
10826
10751
-
Glu
CTC
[ENA]
¡û
>W1910571398
JJQH01000190
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
10738
10663
-
Glu
CTC
[ENA]
¡û
>W1910571418
JJQI01000026
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
316576
316651
+
Glu
CTC
[ENA]
¡û
>W1910571473
JJQJ01000087
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
10706
10631
-
Glu
CTC
[ENA]
¡û
>W1910571523
JJQK01000054
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
10492
10417
-
Glu
CTC
[ENA]
¡û
>W1910571574
JJQL01000015
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
71975
71900
-
Glu
CTC
[ENA]
¡û
>W1910571678
JJQM01000170
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
10684
10609
-
Glu
CTC
[ENA]
¡û
>W1910571723
JJQN01000132
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
10521
10446
-
Glu
CTC
[ENA]
¡û
>W1910571757
JJQO01000088
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
10691
10616
-
Glu
CTC
[ENA]
¡û
>W1910571823
JJQP01000160
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
7037
6962
-
Glu
CTC
[ENA]
¡û
>W1910571879
JJQQ01000104
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
19292
19367
+
Glu
CTC
[ENA]
¡û
>W1910571933
JJQR01000097
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
10693
10618
-
Glu
CTC
[ENA]
¡û
>W1910571977
JJQS01000061
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
10826
10751
-
Glu
CTC
[ENA]
¡û
>W1910572011
JJQT01000044
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
2810
2885
+
Glu
CTC
[ENA]
¡û
>W1910572087
JJQU01000138
Euryarchaeota
Methanosarcina mazei 1.H.M.2.1 [JJQU]
10641
10566
-
Glu
CTC
[ENA]
¡û
>W1910572141
JJQV01000104
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
97606
97681
+
Glu
CTC
[ENA]
¡û
>W1910572165
JJQW01000029
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
10756
10681
-
Glu
CTC
[ENA]
¡û
>W1910572221
JJQX01000094
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
16243
16318
+
Glu
CTC
[ENA]
¡û
>W1910572289
JJQY01000147
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
137825
137750
-
Glu
CTC
[ENA]
¡û
>W1910572327
JJQZ01000111
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
10810
10735
-
Glu
CTC
[ENA]
¡û
>W1910572386
JJRA01000121
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
49540
49615
+
Glu
CTC
[ENA]
¡û
>W1910572422
JJRB01000084
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
97627
97702
+
Glu
CTC
[ENA]
¡û
>W1910575081
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
261148
261073
-
Glu
CTC
[ENA]
¡û
>W1910635233
LMVP01000021
Euryarchaeota
Methanosarcina spelaei MC-15 [LMVP]
11129
11204
+
Glu
CTC
[ENA]
¡û
>W1910655396
LZPK01000183
Euryarchaeota
Methanosarcina sp. A14 [LZPK]
9407
9482
+
Glu
CTC
[ENA]
¡û
>W1910694777
MDTP02000052
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
54005
53930
-
Glu
CTC
[ENA]
¡û
>W1610000017
AAAR03000003
Euryarchaeota
Methanosarcina barkeri str. fusaro [AAAR]
92685
92760
+
Glu
CTC
[ENA]
¡û
>W1610046896
BBCW01000025
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
5990
5915
-
Glu
CTC
[ENA]
¡û
>W1610048603
BBEF01000031
Euryarchaeota
Methanosarcina barkeri JCM 10043 [BBEF]
3900
3825
-
Glu
CTC
[ENA]
¡û
>W1610605109
LFRP01000025
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
45976
45899
-
Glu
CTC
[ENA]
¡û
>W1610670267
LKAZ01000053
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
108736
108659
-
Glu
CTC
[ENA]
¡û
>W1610945917
LUYE01000017
Euryarchaeota
Methanosarcinales archaeon Methan_01 [LUYE]
14351
14425
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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