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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127253 (9 seq.)
>WENV170624526
FUWD013182687
[FUWD] metagenome; unknown
20955
21035
+
Ser
GCT
[ENA]
¡û
>WENV170632812
FUWD013387402
[FUWD] metagenome; unknown
20955
21035
+
Ser
GCT
[ENA]
¡û
>SRA1035925
SRR035089.404350
454 Sequencing (SRP001810)
253
333
+
Ser
GCT
[SRA]
>SRA1039978
SRR035091.8590
454 Sequencing (SRP001812)
228
148
-
Ser
GCT
[SRA]
>SRA1040532
SRR035091.110385
454 Sequencing (SRP001812)
13
93
+
Ser
GCT
[SRA]
>SRA1040950
SRR035091.172892
454 Sequencing (SRP001812)
375
295
-
Ser
GCT
[SRA]
>SRA1042878
SRR035091.460413
454 Sequencing (SRP001812)
136
216
+
Ser
GCT
[SRA]
>SRA1049166
SRR035095.31607
454 Sequencing (SRP001816)
163
243
+
Ser
GCT
[SRA]
>SRA1049594
SRR035095.100589
454 Sequencing (SRP001816)
310
230
-
Ser
GCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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