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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127299 (19 seq.)
>W1711294572
LZZM01000234
Bacillota
Clostridium puniceum [LZZM]
19493
19410
-
Tyr
GTA
[ENA]
¡û
>W1711294575
LZZM01000234
Bacillota
Clostridium puniceum [LZZM]
19110
19027
-
Tyr
GTA
[ENA]
¡û
>W1711294578
LZZM01000234
Bacillota
Clostridium puniceum [LZZM]
18704
18621
-
Tyr
GTA
[ENA]
¡û
>WENV180275693
OBHU01000098
[OBHU] human gut metagenome; feces
60194
60277
+
Tyr
GTA
[ENA]
¡û
>WENV180477912
OBYZ01038387
[OBYZ] human gut metagenome; faeces
250
167
-
Tyr
GTA
[ENA]
¡û
>WENV180941424
ODTZ01005032
[ODTZ] human metagenome; G_DNA_Stool
84
1
-
Tyr
GTA
[ENA]
¡û
>WENV182945900
OKVK01002197
[OKVK] human gut metagenome; human gut
2229
2146
-
Tyr
GTA
[ENA]
¡û
>C181176745
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
1478171
1478254
+
Tyr
GTA
-
¡û
>C181176748
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
1478620
1478703
+
Tyr
GTA
-
¡û
>C181176751
CP029329
Bacillota
Clostridium beijerinckii [CP029329]
1478952
1479035
+
Tyr
GTA
-
¡û
>W2010445457
JAABNP010000009
Bacillota
Clostridium sp. C2-6-12 [JAABNP]
100529
100612
+
Tyr
GTA
[ENA]
¡û
>W2010445460
JAABNP010000009
Bacillota
Clostridium sp. C2-6-12 [JAABNP]
100941
101024
+
Tyr
GTA
[ENA]
¡û
>W2010445463
JAABNP010000009
Bacillota
Clostridium sp. C2-6-12 [JAABNP]
101353
101436
+
Tyr
GTA
[ENA]
¡û
>C211028052
AP024849
Bacillota
Clostridium sp. C5S11 [AP024849]
659341
659424
+
Tyr
GTA
-
¡û
>C211028055
AP024849
Bacillota
Clostridium sp. C5S11 [AP024849]
659714
659797
+
Tyr
GTA
-
¡û
>C211028058
AP024849
Bacillota
Clostridium sp. C5S11 [AP024849]
660087
660170
+
Tyr
GTA
-
¡û
>WENV084298
BAAZ01010499
Gut microbiome of Human (healthy human sample F2-X, Child, Male)
608
693
+
Tyr
GTA
[ENA]
>W1710586808
FQXM01000006
Bacillota
Clostridium grantii DSM 8605 [FQXM]
53370
53287
-
Tyr
GTA
[ENA]
¡û
>W1710586810
FQXM01000006
Bacillota
Clostridium grantii DSM 8605 [FQXM]
53153
53070
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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