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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127312 (25 seq.)
>W1711404285
MFYH01000023
Unclassified
Candidatus Peribacteria bacterium RIFOXYA1_FULL_56_14 [MFYH]
282446
282369
-
Val
TAC
[ENA]
¡û
>W1711404328
MFYI01000008
Unclassified
Candidatus Peribacteria bacterium RIFOXYA2_FULL_55_28 [MFYI]
121047
120970
-
Val
TAC
[ENA]
¡û
>W1711404371
MFYJ01000007
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_54_35 [MFYJ]
325560
325483
-
Val
TAC
[ENA]
¡û
>W1711404437
MFYK01000021
Unclassified
Candidatus Peribacteria bacterium RIFOXYB1_FULL_57_12 [MFYK]
9369
9292
-
Val
TAC
[ENA]
¡û
>W1711404456
MFYL01000013
Unclassified
Candidatus Peribacteria bacterium RIFOXYB2_FULL_54_17 [MFYL]
60238
60315
+
Val
TAC
[ENA]
¡û
>W1711404507
MFYM01000010
Unclassified
Candidatus Peribacteria bacterium RIFOXYC1_FULL_54_13 [MFYM]
94426
94349
-
Val
TAC
[ENA]
¡û
>W1711404539
MFYN01000018
Unclassified
Candidatus Peribacteria bacterium RIFOXYC1_FULL_58_8 [MFYN]
1925
1848
-
Val
TAC
[ENA]
¡û
>W1711404563
MFYO01000001
Unclassified
Candidatus Peribacteria bacterium RIFOXYC2_FULL_55_14 [MFYO]
59879
59956
+
Val
TAC
[ENA]
¡û
>W1711404641
MFYP01000046
Unclassified
Candidatus Peribacteria bacterium RIFOXYC2_FULL_58_10 [MFYP]
65086
65009
-
Val
TAC
[ENA]
¡û
>W1711404684
MFYQ01000038
Unclassified
Candidatus Peribacteria bacterium RIFOXYD1_FULL_54_13 [MFYQ]
104635
104558
-
Val
TAC
[ENA]
¡û
>W1711404725
MFYR01000014
Unclassified
Candidatus Peribacteria bacterium RIFOXYD2_FULL_58_15 [MFYR]
58600
58677
+
Val
TAC
[ENA]
¡û
>W1711583020
MNWP01000040
Unclassified
Candidatus Peregrinibacteria bacterium CG1_02_54_53 [MNWP]
17759
17682
-
Val
TAC
[ENA]
¡û
>WENV170382599
CETX01029473
[CETX] marine metagenome genome assembly TARA_138_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
825
748
-
Val
TAC
[ENA]
¢þ
>WENV170611502
FUWD012334292
[FUWD] metagenome; unknown
3
80
+
Val
TAC
[ENA]
¢þ
>SRA1017150
SRR035082.89429
454 Sequencing (SRP001803)
251
328
+
Val
TAC
[SRA]
>SRA1029151
SRR035087.82708
454 Sequencing (SRP001808)
337
260
-
Val
TAC
[SRA]
>SRA1030764
SRR035087.328416
454 Sequencing (SRP001808)
337
260
-
Val
TAC
[SRA]
>W1511618901
LCRQ01000028
Unclassified
Candidatus Peribacteria bacterium GW2011_GWB1_54_5 GW2011_GWB1_54_5 [LCRQ]
5941
6018
+
Val
TAC
[ENA]
¡û
>W1511618967
LCRS01000026
Unclassified
Candidatus Peribacteria bacterium GW2011_GWC2_54_8 GW2011_GWC2_54_8 [LCRS]
4034
4111
+
Val
TAC
[ENA]
¡û
>W1511619034
LCRV01000031
Unclassified
Candidatus Peregrinibacteria bacterium GW2011_GWA2_54_9 GW2011_GWA2_54_9 [LCRV]
4472
4549
+
Val
TAC
[ENA]
¡û
>C161050434
CP013062
Unclassified
Candidatus Peribacter riflensis [CP013062]
440630
440707
+
Val
TAC
-
¡û
>C161050478
CP013063
Unclassified
Candidatus Peribacter riflensis [CP013063]
440716
440793
+
Val
TAC
-
¡û
>C161050522
CP013064
Unclassified
Candidatus Peribacter riflensis [CP013064]
440716
440793
+
Val
TAC
-
¡û
>C161050566
CP013065
Unclassified
Candidatus Peribacter riflensis [CP013065]
440716
440793
+
Val
TAC
-
¡û
>C161050610
CP013066
Unclassified
Candidatus Peribacter riflensis [CP013066]
440715
440792
+
Val
TAC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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