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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127426 (4 seq.)
>WENV180362401
OBNW01151101
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
209
290
+
Tyr
GTA
[ENA]
¡û
>WENV170988794
MWVY01007614
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
266
183
-
Tyr
GTA
[ENA]
¡û
>WENV170991782
MWWA01319446
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
297
214
-
Tyr
GTA
[ENA]
¡û
>W2011493786
RWJG01000016
Bacteroidota
Chryseobacterium sp. XH07 [RWJG]
479161
479080
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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