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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127449 (10 seq.)
>WENV180022385
FTGC01000582
[FTGC] metagenome; soil
189
272
+
Leu
CAA
[ENA]
¡û
>WENV180023083
FTHI01001034
[FTHI] metagenome; soil
1812
1729
-
Leu
CAA
[ENA]
¡û
>WENV180026096
FTIR01053152
[FTIR] metagenome; soil
371
288
-
Leu
CAA
[ENA]
¡û
>WENV180026118
FTIR01090030
[FTIR] metagenome; soil
279
196
-
Leu
CAA
[ENA]
¡û
>WENV180026797
FTIU01157442
[FTIU] metagenome; soil
167
84
-
Leu
CAA
[ENA]
¡û
>WENV180029852
FTJL01008699
[FTJL] metagenome; soil
1503
1586
+
Leu
CAA
[ENA]
¡û
>WENV180033943
FTKM01004687
[FTKM] metagenome; soil
28489
28572
+
Leu
CAA
[ENA]
¡û
>WENV180035439
FTKZ01001508
[FTKZ] metagenome; soil
2448
2365
-
Leu
CAA
[ENA]
¡û
>WENV183696712
OULY01000045
[OULY] metagenome; soil
9767
9850
+
Leu
CAA
[ENA]
¡û
>W2110569110
JAGSGD010000001
Alphaproteobacteria
Phenylobacterium sp. 20VBR1 [JAGSGD]
3376488
3376405
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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