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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127456 (25 seq.)
>W1711361356
MDLC01000094
Gammaproteobacteria
Candidatus Endobugula sertula [MDLC]
645
562
-
Tyr
GTA
[ENA]
¡û
>C171100126
CP019799
Gammaproteobacteria
Cellvibrio sp. PSBB023 [CP019799]
4154819
4154902
+
Tyr
GTA
-
¡û
>C171118527
CP021382
Gammaproteobacteria
Cellvibrio sp. PSBB006 [CP021382]
2215995
2215912
-
Tyr
GTA
-
¡û
>W131215016
ATUQ01000011
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [ATUQ]
34276
34359
+
Tyr
GTA
[ENA]
¡û
>WENV180029011
FTJI01003251
[FTJI] metagenome; soil
2902
2985
+
Tyr
GTA
[ENA]
¡û
>WENV180030762
FTJN01029424
[FTJN] metagenome; soil
295
378
+
Tyr
GTA
[ENA]
¡û
>WENV180034535
FTKR01003169
[FTKR] metagenome; soil
2902
2985
+
Tyr
GTA
[ENA]
¡û
>WENV180038853
LLBY010008544
[LLBY] soil metagenome; soil from tomato rhizosphere
212
129
-
Tyr
GTA
[ENA]
¡û
>WENV180041072
LLBZ010040123
[LLBZ] soil metagenome; soil from tomato rhizosphere
3464
3547
+
Tyr
GTA
[ENA]
¡û
>WENV182586072
OJHJ01000727
[OJHJ] seawater metagenome; Sea water
642
559
-
Tyr
GTA
[ENA]
¡û
>C08003212
CP000934
Gammaproteobacteria
Cellvibrio japonicus Ueda107 [CP000934]
816436
816519
+
Tyr
GTA
[Ensembl]
¡û
>W141819848
JQMM01000001
Gammaproteobacteria
Porticoccus hydrocarbonoclasticus MCTG13d [JQMM]
428416
428333
-
Tyr
GTA
[ENA]
¡û
>W1910911044
NHNI01000001
Gammaproteobacteria
Cellvibrio mixtus PSBB022 [NHNI]
1784412
1784329
-
Tyr
GTA
[ENA]
¡û
>W2010717378
JACHXZ010000006
Gammaproteobacteria
Simiduia aestuariiviva CECT 8571 [JACHXZ]
41645
41728
+
Tyr
GTA
[ENA]
¡û
>W2010965049
NHNI01000001
Gammaproteobacteria
Cellvibrio mixtus PSBB022 [NHNI]
1784412
1784329
-
Tyr
GTA
[ENA]
¡û
>W2011652319
SNZQ01000006
Gammaproteobacteria
Cellvibrio sp. YR554 [SNZQ]
4004
4087
+
Tyr
GTA
[ENA]
¡û
>C201049238
CP031727
Gammaproteobacteria
Cellvibrio sp. KY-YJ-3 [CP031727]
219930
219847
-
Tyr
GTA
-
¡û
>W1510018766
BBUL01000051
Gammaproteobacteria
Cellvibrio sp. OA-2007 [BBUL]
481
398
-
Tyr
GTA
[ENA]
¡û
>C231287271
CP090959
Gammaproteobacteria
Simiduia sp. 21SJ11W-1 [CP090959]
3386825
3386742
-
Tyr
GTA
-
¡û
>W2110757489
PRDL01000001
Gammaproteobacteria
Cellvibrio polysaccharolyticus Ka43 [PRDL]
3728251
3728168
-
Tyr
GTA
[ENA]
¡û
>W2110761154
QRAI01000004
Gammaproteobacteria
Saccharophagus sp. K07 [QRAI]
343556
343639
+
Tyr
GTA
[ENA]
¡û
>W121045193
AICM01000008
Gammaproteobacteria
Cellvibrio sp. BR [AICM]
4270
4353
+
Tyr
GTA
[ENA]
¡û
>W1610005728
ALBT01000129
Gammaproteobacteria
Cellvibrio mixtus subsp. mixtus J3-8 [ALBT]
449
366
-
Tyr
GTA
[ENA]
¡û
>C131006079
CP003746
Gammaproteobacteria
Simiduia agarivorans SA1 = DSM 21679 [CP003746]
2036860
2036777
-
Tyr
GTA
[Ensembl]
¡û
>W1710005489
ALBT01000129
Gammaproteobacteria
Cellvibrio mixtus subsp. mixtus J3-8 [ALBT]
449
366
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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