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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127582 (66 seq.)
>A171000418
CP001338
Euryarchaeota
Methanosphaerula palustris E1-9c [CP001338]
581922
581848
-
Met
CAT
-
¡û
>A171002819
CP003167
Euryarchaeota
Methanoregula formicica SMSP [CP003167]
37454
37529
+
Met
CAT
-
¡û
>WENV180098937
MTBK01276557
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1183
1259
+
fMet
CAT
[ENA]
¢þ
>WENV181231029
OFEK01008139
[OFEK] activated sludge metagenome; Anaerobic digester
1411
1337
-
fMet
CAT
[ENA]
¢þ
>WENV181359211
OFMW01000098
[OFMW] sediment metagenome; Lake sediment
845
920
+
fMet
CAT
[ENA]
¢þ
>WENV181361010
OFNF01000180
[OFNF] sediment metagenome; Lake sediment
770
845
+
fMet
CAT
[ENA]
¢þ
>WENV181361345
OFNN01000799
[OFNN] sediment metagenome; Lake sediment
214
289
+
fMet
CAT
[ENA]
¢þ
>WENV181361443
OFNX01000143
[OFNX] sediment metagenome; Lake sediment
745
820
+
fMet
CAT
[ENA]
¢þ
>WENV181361750
OFOH01000658
[OFOH] sediment metagenome; Lake sediment
255
180
-
fMet
CAT
[ENA]
¢þ
>WENV183512233
OMKS01000160
[OMKS] sediment metagenome; hot spring sediment
42336
42262
-
fMet
CAT
[ENA]
¢þ
>WENV183512676
OMKS01001054
[OMKS] sediment metagenome; hot spring sediment
9406
9480
+
fMet
CAT
[ENA]
¢þ
>WENV183513021
OMKS01002369
[OMKS] sediment metagenome; hot spring sediment
15791
15716
-
fMet
CAT
[ENA]
¢þ
>WENV183514625
OMKS01025451
[OMKS] sediment metagenome; hot spring sediment
2427
2502
+
fMet
CAT
[ENA]
¢þ
>WENV183514626
OMKS01025451
[OMKS] sediment metagenome; hot spring sediment
2697
2772
+
fMet
CAT
[ENA]
¢þ
>WENV183516012
OMKS01118576
[OMKS] sediment metagenome; hot spring sediment
74
-1
-
fMet
CAT
[ENA]
¢þ
>WENV183701751
PDVH01000819
[PDVH] alkali sediment metagenome; glacial lake sediment
6002
5927
-
fMet
CAT
[ENA]
¢þ
>WENV183702070
PDVH01011216
[PDVH] alkali sediment metagenome; glacial lake sediment
907
982
+
fMet
CAT
[ENA]
¢þ
>WENV183702748
PDVJ01000016
[PDVJ] alkali sediment metagenome; glacial lake sediment
44249
44324
+
fMet
CAT
[ENA]
¢þ
>WENV183703169
PDVJ01004276
[PDVJ] alkali sediment metagenome; glacial lake sediment
3072
2997
-
fMet
CAT
[ENA]
¢þ
>WENV183703307
PDVJ01008556
[PDVJ] alkali sediment metagenome; glacial lake sediment
198
273
+
fMet
CAT
[ENA]
¢þ
>WENV183703423
PDVJ01013451
[PDVJ] alkali sediment metagenome; glacial lake sediment
79
4
-
fMet
CAT
[ENA]
¢þ
>WENV183703526
PDVJ01020586
[PDVJ] alkali sediment metagenome; glacial lake sediment
16
91
+
fMet
CAT
[ENA]
¢þ
>WENV183703770
PDVJ01044070
[PDVJ] alkali sediment metagenome; glacial lake sediment
279
354
+
fMet
CAT
[ENA]
¢þ
>WENV183703799
PDVJ01048343
[PDVJ] alkali sediment metagenome; glacial lake sediment
607
682
+
fMet
CAT
[ENA]
¢þ
>WENV183703945
PDVJ01074153
[PDVJ] alkali sediment metagenome; glacial lake sediment
336
261
-
fMet
CAT
[ENA]
¢þ
>WENV170562332
CZCB01002232
[CZCB] anaerobic digester metagenome; anaerobic digester
24978
25052
+
Met
CAT
[ENA]
¢þ
>WENV170562437
CZCB01002784
[CZCB] anaerobic digester metagenome; anaerobic digester
4039
3965
-
Met
CAT
[ENA]
¢þ
>WENV170635053
JAHE01209121
[JAHE] sediment metagenome; lake sediment
82
157
+
Met
CAT
[ENA]
¢þ
>WENV170670439
LAHT01010764
[LAHT] activated sludge metagenome; Sample C-4; Sludge from methanogenic chamber (fourth chamber) of Anaerobic Baffled Reactor over
1614
1689
+
Met
CAT
[ENA]
¢þ
>WENV170674741
LCWY01001401
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
696
770
+
Met
CAT
[ENA]
¢þ
>WENV170677284
LDZT01004685
[LDZT] terrestrial metagenome; oil reservoir sample SB1
5683
5609
-
Met
CAT
[ENA]
¢þ
>WENV170678690
LDZU01003814
[LDZU] terrestrial metagenome; oil reservoir sample SB2
2987
2913
-
Met
CAT
[ENA]
¢þ
>WENV170678765
LDZU01004237
[LDZU] terrestrial metagenome; oil reservoir sample SB2
1296
1222
-
Met
CAT
[ENA]
¢þ
>WENV170688963
LFRM01270219
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
24978
25052
+
Met
CAT
[ENA]
¢þ
>WENV170693738
LGVC01053570
[LGVC] marine sediment metagenome; sample #5133, Elevator 3A push core 47, collected at Hydrate Ridge North during Jason II dive
987
913
-
Met
CAT
[ENA]
¢þ
>WENV170715269
LNQE01001161
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
3712
3637
-
Met
CAT
[ENA]
¢þ
>WENV170715984
LQYC01000044
[LQYC] bioreactor metagenome; benzene-degrading methanogenic enrichment culture from a contaminated aquifer at an oil
41189
41114
-
Met
CAT
[ENA]
¢þ
>WENV170717402
LSQX01034387
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
30614
30688
+
Met
CAT
[ENA]
¢þ
>WENV170717644
LSQX01044280
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
14940
15014
+
Met
CAT
[ENA]
¢þ
>WENV170718558
LSQX01081481
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4117
4191
+
Met
CAT
[ENA]
¢þ
>At0672
CP000780
Euryarchaeota
Methanoregula boonei 6A8 [CP000780]
87426
87352
-
Met
CAT
[Ensembl]
¡û
>At1223
CP000559
Euryarchaeota
Methanocorpusculum labreanum Z [CP000559]
742054
741980
-
Met
CAT
[Ensembl]
¡û
>At1635
CP000254
Euryarchaeota
Methanospirillum hungatei JF-1 [CP000254]
2765339
2765265
-
Met
CAT
[Ensembl]
¡û
>WENV170969023
MTKW01019040
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
948
1022
+
Met
CAT
[ENA]
¢þ
>WENV170969024
MTKW01019041
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1063
1137
+
Met
CAT
[ENA]
¢þ
>WENV170970978
MTKX01000831
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
10891
10817
-
Met
CAT
[ENA]
¢þ
>WENV170976065
MTKZ01004222
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
693
767
+
Met
CAT
[ENA]
¢þ
>W1910211668
FMID01000014
Euryarchaeota
Methanoculleus chikugoensis [FMID]
29772
29698
-
Met
CAT
[ENA]
¡û
>W1910226971
FNFT01000005
Euryarchaeota
Methanoculleus thermophilus DSM 2373 [FNFT]
204775
204701
-
Met
CAT
[ENA]
¡û
>W1910617160
LHQS01000001
Euryarchaeota
Methanoculleus taiwanensis CYW4 [LHQS]
353405
353331
-
Met
CAT
[ENA]
¡û
>W1910635198
LMVO01000007
Euryarchaeota
Methanocorpusculum parvum XII [LMVO]
31970
32044
+
Met
CAT
[ENA]
¡û
>W1910783518
MPOY01000065
Euryarchaeota
Methanoculleus sp. EBM-46 [MPOY]
141
67
-
Met
CAT
[ENA]
¡û
>W1911581309
PGCL01000001
Euryarchaeota
Methanofollis fontis FWC-SCC2 [PGCL]
177545
177620
+
Met
CAT
[ENA]
¡û
>W1911675969
QGMZ01000038
Euryarchaeota
Methanospirillum stamsii Pt1 [QGMZ]
648
722
+
Met
CAT
[ENA]
¡û
>W1610000185
AALU01000015
Euryarchaeota
Methanospirillum hungatei JF-1 [AALU]
55913
55837
-
Met
CAT
[ENA]
¡û
>W1610000989
ABZB01000001
Euryarchaeota
Methanosphaerula palustris palustris E1-9c [ABZB]
159195
159121
-
Met
CAT
[ENA]
¡û
>W1610003497
AGCO01000007
Euryarchaeota
Methanofollis liminatans DSM 4140 [AGCO]
858883
858960
+
Met
CAT
[ENA]
¡û
>W1610003498
AGCO01000007
Euryarchaeota
Methanofollis liminatans DSM 4140 [AGCO]
859154
859229
+
Met
CAT
[ENA]
¡û
>W1610004272
AGIY02000001
Euryarchaeota
Methanolinea tarda NOBI-1 [AGIY]
110100
110026
-
Met
CAT
[ENA]
¡û
>W1610024410
AUMX01000002
Euryarchaeota
Methanocorpusculum bavaricum DSM 4179 [AUMX]
15123
15049
-
Met
CAT
[ENA]
¡û
>W1610062955
BCNW01000001
Euryarchaeota
Methanofollis ethanolicus HASU [BCNW]
48719
48796
+
Met
CAT
[ENA]
¡û
>W1610605029
LFRN01000190
Euryarchaeota
Candidatus Methanoculleus thermohydrogenotrophicum DTU006 [LFRN]
24978
25052
+
Met
CAT
[ENA]
¡û
>W1610614427
LGHE01000222
Euryarchaeota
Methanoculleus marisnigri [LGHE]
2987
2913
-
Met
CAT
[ENA]
¡û
>W1610685944
LKUD01000028
Euryarchaeota
Methanoculleus sp. SDB [LKUD]
35781
35707
-
Met
CAT
[ENA]
¡û
>W1610686032
LKUF01000277
Euryarchaeota
Methanolinea sp. SDB [LKUF]
2741
2664
-
Met
CAT
[ENA]
¡û
>W1610946057
LUYJ01000140
Euryarchaeota
Methanomicrobiales archaeon Methan_06 [LUYJ]
147
71
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK