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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127594 (24 seq.)
>W1711300597
MAHC01000016
Bacteroidota
Elizabethkingia meningoseptica [MAHC]
626999
626924
-
Val
TAC
[ENA]
¡û
>W1711373118
MDTZ01000012
Bacteroidota
Elizabethkingia meningoseptica [MDTZ]
50696
50621
-
Val
TAC
[ENA]
¡û
>W1711505175
MKVG01000004
Bacteroidota
Flavobacterium sp. 38-13 [MKVG]
35392
35315
-
Val
TAC
[ENA]
¡û
>W1711505204
MKVG01000020
Bacteroidota
Flavobacterium sp. 38-13 [MKVG]
300225
300300
+
Val
TAC
[ENA]
¡û
>C171048191
CP016376
Bacteroidota
Elizabethkingia meningoseptica G4076 [CP016376]
599237
599312
+
Val
TAC
-
¡û
>W131188318
ASAN01000006
Bacteroidota
Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 [ASAN]
112275
112350
+
Val
TAC
[ENA]
¡û
>W131241072
BARD01000002
Bacteroidota
Elizabethkingia meningoseptica ATCC 13253 = NBRC 12535 [BARD]
64581
64506
-
Val
TAC
[ENA]
¡û
>WENV180296855
OBJA01003856
[OBJA] soil metagenome; sediment, water from around vicinity
2175
2100
-
Val
TAC
[ENA]
¢þ
>WENV181731326
OGQD01000398
[OGQD] human gut metagenome; faeces
21002
21077
+
Val
TAC
[ENA]
¢þ
>WENV170920451
MDTF01017943
[MDTF] marine metagenome; seawater
11271
11194
-
Val
TAC
[ENA]
¢þ
>C181016475
CP014338
Bacteroidota
Elizabethkingia meningoseptica KC1913 [CP014338]
599237
599312
+
Val
TAC
-
¡û
>C191115363
CP033917
Bacteroidota
Chryseobacterium sp. G0201 [CP033917]
1580755
1580680
-
Val
TAC
-
¡û
>C191116068
CP033928
Bacteroidota
Chryseobacterium indoltheticum G0211 [CP033928]
2672642
2672717
+
Val
TAC
-
¡û
>W1810173576
PJND01000009
Bacteroidota
Flavobacterium lindanitolerans IP-10 [PJND]
56541
56466
-
Val
TAC
[ENA]
¡û
>W1810173582
PJND01000013
Bacteroidota
Flavobacterium lindanitolerans IP-10 [PJND]
20254
20329
+
Val
TAC
[ENA]
¡û
>W1810628397
QICL01000022
Bacteroidota
Dysgonomonas alginatilytica DSM 100214 [QICL]
15318
15393
+
Val
TAC
[ENA]
¡û
>W11141044
AENH01000001
Bacteroidota
Riemerella anatipestifer RA-YM [AENH]
115059
114982
-
Val
TAC
[ENA]
¡û
>W1511698627
LGIA01000070
Bacteroidota
Sunxiuqinia dokdonensis SK [LGIA]
1737
1660
-
Val
TAC
[ENA]
¡û
>C121003039
CP002831
Bacteroidota
Saprospira grandis str. Lewin [CP002831]
2704946
2705023
+
Val
TAC
[Ensembl]
¡û
>C121003049
CP002831
Bacteroidota
Saprospira grandis str. Lewin [CP002831]
3915048
3914971
-
Val
TAC
[Ensembl]
¡û
>C121017029
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
1202423
1202346
-
Val
TAC
[Ensembl]
¡û
>C121017030
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
1202316
1202241
-
Val
TAC
[Ensembl]
¡û
>W121017435
AGRT01000021
Bacteroidota
Saprospira grandis DSM 2844 [AGRT]
24815
24738
-
Val
TAC
[ENA]
¡û
>W121017465
AGRT01000050
Bacteroidota
Saprospira grandis DSM 2844 [AGRT]
2680
2603
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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