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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127757 (46 seq.)
>WENV180237668
OBCY01021004
[OBCY] human gut metagenome; human gut
363
446
+
Leu
GAG
[ENA]
¡û
>WENV180243845
OBDJ01158795
[OBDJ] human gut metagenome; human gut
111
194
+
Leu
GAG
[ENA]
¡û
>WENV180245295
OBDM01010242
[OBDM] human gut metagenome; human gut
382
465
+
Leu
GAG
[ENA]
¡û
>WENV180453876
OBXM01001459
[OBXM] human gut metagenome; faeces
10912
10995
+
Leu
GAG
[ENA]
¡û
>WENV180542497
OCHS01213777
[OCHS] human gut metagenome; human gut
73
156
+
Leu
GAG
[ENA]
¡û
>WENV180761629
ODHZ01017239
[ODHZ] human metagenome; G_DNA_Stool
72
155
+
Leu
GAG
[ENA]
¡û
>WENV181149709
OEHT01201493
[OEHT] human metagenome; G_DNA_Stool
170
87
-
Leu
GAG
[ENA]
¡û
>WENV181270289
OFGE01092685
[OFGE] mouse gut metagenome; faeces
295
378
+
Leu
GAG
[ENA]
¡û
>WENV181331883
OFLZ01067709
[OFLZ] human gut metagenome; human gut
238
155
-
Leu
GAG
[ENA]
¡û
>WENV181702068
OGPH01016138
[OGPH] human gut metagenome; faeces
1256
1173
-
Leu
GAG
[ENA]
¡û
>WENV181864794
OGWU01002405
[OGWU] human gut metagenome; faeces
9316
9233
-
Leu
GAG
[ENA]
¡û
>WENV181996245
OHAT01076192
[OHAT] human gut metagenome; faeces
105
22
-
Leu
GAG
[ENA]
¡û
>WENV182204905
OHPR01017262
[OHPR] human gut metagenome; feces
212
295
+
Leu
GAG
[ENA]
¡û
>WENV182325625
OHYS01053755
[OHYS] human gut metagenome; feces
395
478
+
Leu
GAG
[ENA]
¡û
>WENV182713987
OJPG01015514
[OJPG] human gut metagenome; stool sample
648
731
+
Leu
GAG
[ENA]
¡û
>WENV182748310
OJQW01005629
[OJQW] human gut metagenome; stool sample
2344
2261
-
Leu
GAG
[ENA]
¡û
>WENV182759745
OJRJ01031409
[OJRJ] human gut metagenome; stool sample
352
269
-
Leu
GAG
[ENA]
¡û
>WENV182760971
OJRL01007749
[OJRL] human gut metagenome; stool sample
528
611
+
Leu
GAG
[ENA]
¡û
>WENV183086431
OLJF01040666
[OLJF] metagenome; faeces
372
455
+
Leu
GAG
[ENA]
¡û
>WENV183109960
OLNN01041421
[OLNN] human gut metagenome; faeces
573
656
+
Leu
GAG
[ENA]
¡û
>WENV183151957
OLOQ01001406
[OLOQ] human gut metagenome; faeces
18260
18177
-
Leu
GAG
[ENA]
¡û
>WENV183176685
OLPF01034179
[OLPF] human gut metagenome; faeces
76
159
+
Leu
GAG
[ENA]
¡û
>WENV183243949
OLRD01001911
[OLRD] human gut metagenome; faeces
7896
7979
+
Leu
GAG
[ENA]
¡û
>WENV183253137
OLRI01024170
[OLRI] human gut metagenome; faeces
217
134
-
Leu
GAG
[ENA]
¡û
>WENV183257761
OLRM01006162
[OLRM] human gut metagenome; faeces
597
680
+
Leu
GAG
[ENA]
¡û
>WENV183275251
OLRY01020084
[OLRY] human gut metagenome; faeces
18
101
+
Leu
GAG
[ENA]
¡û
>WENV183276449
OLRZ01007818
[OLRZ] human gut metagenome; faeces
3469
3386
-
Leu
GAG
[ENA]
¡û
>WENV183297726
OLSM01008320
[OLSM] human gut metagenome; faeces
105
188
+
Leu
GAG
[ENA]
¡û
>WENV183326527
OLVZ01019222
[OLVZ] human gut metagenome; faeces
1737
1654
-
Leu
GAG
[ENA]
¡û
>WENV183470363
OMEJ01034195
[OMEJ] human gut metagenome; feces
508
591
+
Leu
GAG
[ENA]
¡û
>WENV183655585
OQWD01035326
[OQWD] human gut metagenome; human gut
561
478
-
Leu
GAG
[ENA]
¡û
>WENV183775900
PPYF01073713
[PPYF] human gut metagenome; stool from patient with Crohn's disease
658
741
+
Leu
GAG
[ENA]
¡û
>WENV183784163
PPYF01246984
[PPYF] human gut metagenome; stool from patient with Crohn's disease
2508
2425
-
Leu
GAG
[ENA]
¡û
>WENV170637148
JFBN01310407
[JFBN] chicken gut metagenome; ceca of Broiler chicken
15
98
+
Leu
GAG
[ENA]
¡û
>W2011320318
QWLF01000013
Bacillota
Acutalibacter muris WYJ34-Z31 [QWLF]
8543
8460
-
Leu
GAG
[ENA]
¡û
>W2011346599
QZDU01000001
Bacillota
Acutalibacter sp. 1XD8-36 [QZDU]
371027
370944
-
Leu
GAG
[ENA]
¡û
>W2011366686
RAZF01000037
Bacillota
Acutalibacter sp. 1XD8-33 [RAZF]
18451
18534
+
Leu
GAG
[ENA]
¡û
>W2110102354
CAJFQL010000029
Bacillota
Candidatus Heritagella caecorum [CAJFQL]
1318
1235
-
Leu
GAG
[ENA]
¡û
>W2110124710
CAJTCM010000024
Bacillota
Oscillospiraceae bacterium [CAJTCM]
12524
12607
+
Leu
GAG
[ENA]
¡û
>W2110125090
CAJTCU010000022
Bacillota
Oscillospiraceae bacterium [CAJTCU]
32498
32415
-
Leu
GAG
[ENA]
¡û
>W2110125682
CAJTDP010000030
Bacillota
Oscillospiraceae bacterium [CAJTDP]
17715
17632
-
Leu
GAG
[ENA]
¡û
>W2110128577
CAJTGZ010000025
Bacillota
Oscillospiraceae bacterium [CAJTGZ]
12567
12650
+
Leu
GAG
[ENA]
¡û
>W2110129108
CAJTHO010000025
Bacillota
Oscillospiraceae bacterium [CAJTHO]
32535
32452
-
Leu
GAG
[ENA]
¡û
>W2110129516
CAJTIA010000024
Bacillota
Oscillospiraceae bacterium [CAJTIA]
32536
32453
-
Leu
GAG
[ENA]
¡û
>W2110129562
CAJTIB010000026
Bacillota
Oscillospiraceae bacterium [CAJTIB]
12556
12639
+
Leu
GAG
[ENA]
¡û
>C161087081
CP015400
Bacillota
Hungateiclostridiaceae bacterium KB18 [CP015400]
90990
90907
-
Leu
GAG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK