This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127804 (13 seq.)
>C010109
AE017180
Thermodesulfobacteriota
Geobacter sulfurreducens PCA [AE017180]
3633932
3634009
+
Glu
TTC
[Ensembl]
¡û
>WENV180210051
OBAL01080207
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
182
259
+
Glu
TTC
[ENA]
¢þ
>WENV181231417
OFEK01025017
[OFEK] activated sludge metagenome; Anaerobic digester
470
547
+
Glu
TTC
[ENA]
¢þ
>WENV183685054
ORMF010796363
[ORMF] groundwater metagenome; groundwater
220
143
-
Glu
TTC
[ENA]
¢þ
>WENV170007112
AMWB02085712
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
67
144
+
Glu
TTC
[ENA]
¢þ
>WENV170934715
MDTG01243355
[MDTG] marine metagenome; seawater
337
260
-
Glu
TTC
[ENA]
¢þ
>C191000618
AP017912
Thermodesulfobacteriota
Geobacter sulfurreducens YM18 [AP017912]
3530628
3530705
+
Glu
TTC
-
¡û
>W1810486169
QAXR01000008
Thermodesulfobacteriota
Geobacter sp. DSM 2909 [QAXR]
149875
149952
+
Glu
TTC
[ENA]
¡û
>C151059740
CP009788
Thermodesulfobacteriota
Geobacter pickeringii G13 [CP009788]
3293936
3294013
+
Glu
TTC
[Ensembl]
¡û
>C10107451
CP002031
Thermodesulfobacteriota
Geobacter sulfurreducens KN400 [CP002031]
3533957
3534034
+
Glu
TTC
[Ensembl]
¡û
>W1511500998
JXBL01000001
Thermodesulfobacteriota
Geobacter soli GSS01 [JXBL]
3031448
3031525
+
Glu
TTC
[ENA]
¡û
>C161025429
CP010430
Thermodesulfobacteriota
Geobacter sulfurreducens AM-1 [CP010430]
1734836
1734913
+
Glu
TTC
[Ensembl]
¡û
>C161080248
CP014963
Thermodesulfobacteriota
Geobacter anodireducens SD-1 [CP014963]
3371682
3371759
+
Glu
TTC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK