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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127814 (40 seq.)
>A171000871
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
1015417
1015343
-
Glu
TTC
-
¡û
>A171000876
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
825011
824934
-
Glu
TTC
-
¡û
>A171001027
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1575481
1575404
-
Glu
TTC
-
¡û
>A171001032
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1474173
1474096
-
Glu
TTC
-
¡û
>A171001273
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
1436935
1436861
-
Glu
TTC
-
¡û
>A171001281
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
919926
919850
-
Glu
TTC
-
¡û
>A171001476
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
279465
279541
+
Glu
TTC
-
¡û
>A171001492
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
1155892
1155817
-
Glu
TTC
-
¡û
>A171002217
CP002737
Euryarchaeota
Methanotorris igneus Kol 5 [CP002737]
1395400
1395475
+
Glu
TTC
-
¡û
>A171002228
CP002737
Euryarchaeota
Methanotorris igneus Kol 5 [CP002737]
927681
927604
-
Glu
TTC
-
¡û
>A171004479
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1397684
1397761
+
Glu
TTC
-
¡û
>A171004498
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1176847
1176773
-
Glu
TTC
-
¡û
>WENV180317098
OBKJ01020817
[OBKJ] metagenome; hydrothermal vent
327
253
-
Glu
TTC
[ENA]
¢þ
>WENV181206764
OFAW01004835
[OFAW] metagenome; hydrothermal vent
194
271
+
Glu
TTC
[ENA]
¢þ
>WENV181207543
OFAZ01002514
[OFAZ] metagenome; hydrothermal vent
1017
940
-
Glu
TTC
[ENA]
¢þ
>WENV181207906
OFBA01002491
[OFBA] metagenome; hydrothermal vent
1775
1701
-
Glu
TTC
[ENA]
¢þ
>WENV181212784
OFBU01000081
[OFBU] metagenome; hydrothermal vent
9470
9393
-
Glu
TTC
[ENA]
¢þ
>WENV181224075
OFDD01017264
[OFDD] metagenome; hydrothermal vent
190
113
-
Glu
TTC
[ENA]
¢þ
>WENV181224189
OFDE01000636
[OFDE] metagenome; hydrothermal vent
1346
1423
+
Glu
TTC
[ENA]
¢þ
>At0927
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
358869
358943
+
Glu
TTC
[Ensembl]
¡û
>At0931
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
637868
637942
+
Glu
TTC
[Ensembl]
¡û
>At1173
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
1376273
1376347
+
Glu
TTC
[Ensembl]
¡û
>At1186
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
975373
975299
-
Glu
TTC
[Ensembl]
¡û
>W1610000353
AAWX01000001
Euryarchaeota
Methanococcus vannielii SB [AAWX]
711944
711868
-
Glu
TTC
[ENA]
¡û
>W1610000364
AAWX01000002
Euryarchaeota
Methanococcus vannielii SB [AAWX]
126852
126927
+
Glu
TTC
[ENA]
¡û
>W1610001110
ACQW01000003
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
96777
96699
-
Glu
TTC
[ENA]
¡û
>W1610001124
ACQW01000016
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
301
224
-
Glu
TTC
[ENA]
¡û
>W1610001151
ACQY01000012
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
31921
31997
+
Glu
TTC
[ENA]
¡û
>W1610001157
ACQY01000017
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
353
276
-
Glu
TTC
[ENA]
¡û
>W1610001546
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
644015
644093
+
Glu
TTC
[ENA]
¡û
>W1610001562
ACUW01000006
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
15444
15522
+
Glu
TTC
[ENA]
¡û
>W1610001630
ADCA01000002
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
101809
101885
+
Glu
TTC
[ENA]
¡û
>W1610001647
ADCA01000007
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
77840
77917
+
Glu
TTC
[ENA]
¡û
>W1610004280
AGJL01000002
Euryarchaeota
Methanotorris formicicus Mc-S-70 [AGJL]
70549
70627
+
Glu
TTC
[ENA]
¡û
>W1610004299
AGJL01000052
Euryarchaeota
Methanotorris formicicus Mc-S-70 [AGJL]
560
485
-
Glu
TTC
[ENA]
¡û
>W1610018100
APMM01000031
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [APMM]
359
435
+
Glu
TTC
[ENA]
¡û
>W1610018648
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
683816
683740
-
Glu
TTC
[ENA]
¡û
>W1610018655
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
455113
455037
-
Glu
TTC
[ENA]
¡û
>W1610018875
AQXV01000015
Euryarchaeota
Methanothermococcus thermolithotrophicus DSM 2095 [AQXV]
9591
9666
+
Glu
TTC
[ENA]
¡û
>W1610018890
AQXV01000046
Euryarchaeota
Methanothermococcus thermolithotrophicus DSM 2095 [AQXV]
41789
41864
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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