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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127845 (47 seq.)
>W1711138666
LVEB01000001
Chlamydiota
Waddlia chondrophila WSU 86-1044 [LVEB]
106664
106590
-
Pro
TGG
[ENA]
¡û
>W1711502036
MKSG01000052
Chlamydiota
Chlamydia sp. 32-24 [MKSG]
47135
47061
-
Pro
TGG
[ENA]
¡û
>W1711502166
MKSK01000003
Chlamydiota
Chlamydiales bacterium 38-26 [MKSK]
269850
269775
-
Pro
TGG
[ENA]
¡û
>C006649
AE002161
Chlamydiota
Chlamydia pneumoniae AR39 [AE002161]
431349
431275
-
Pro
TGG
[Ensembl]
¡û
>C006664
AE001363
Chlamydiota
Chlamydia pneumoniae CWL029 [AE001363]
409848
409922
+
Pro
TGG
[Ensembl]
¡û
>C006702
BA000008
Chlamydiota
Chlamydia pneumoniae J138 [BA000008]
409557
409631
+
Pro
TGG
[Ensembl]
¡û
>C006740
AE009440
Chlamydiota
Chlamydia pneumoniae TW-183 [AE009440]
407348
407422
+
Pro
TGG
[Ensembl]
¡û
>C017947
BX908798
Chlamydiota
Candidatus Protochlamydia amoebophila UWE25 [BX908798]
1296930
1297004
+
Pro
TGG
[Ensembl]
¡û
>WENV180258288
OBEQ010993098
[OBEQ] groundwater metagenome; groundwater
172
98
-
Pro
TGG
[ENA]
¢þ
>WENV181167466
OEIU01030550
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
470
394
-
Pro
TGG
[ENA]
¢þ
>W141207170
AZNB01000055
Chlamydiota
Chlamydia pneumoniae B21 [AZNB]
1988
2062
+
Pro
TGG
[ENA]
¡û
>W141229828
BASK01001092
Chlamydiota
Neochlamydia sp. S13 [BASK]
71410
71488
+
Pro
TGG
[ENA]
¡û
>W141229870
BASL01000611
Chlamydiota
Candidatus Protochlamydia sp. R18 [BASL]
120644
120566
-
Pro
TGG
[ENA]
¡û
>W141264383
CCEJ010000005
Chlamydiota
Criblamydia sequanensis [CCEJ]
60371
60449
+
Pro
TGG
[ENA]
¡û
>W141265954
CCJF01000005
Chlamydiota
Candidatus Protochlamydia massiliensis 'Diamant' [CCJF]
1352090
1352014
-
Pro
TGG
[ENA]
¡û
>W141273180
CCSC01000002
Chlamydiota
Candidatus Rubidus massiliensis 'Rubis' [CCSC]
53358
53284
-
Pro
TGG
[ENA]
¡û
>WENV170158705
CEOK01014238
[CEOK] marine metagenome genome assembly TARA_030_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
86
160
+
Pro
TGG
[ENA]
¢þ
>WENV170457333
CEVA01371257
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
279
205
-
Pro
TGG
[ENA]
¢þ
>WENV170626867
FUWD013229914
[FUWD] metagenome; unknown
6729
6805
+
Pro
TGG
[ENA]
¢þ
>WENV170627954
FUWD013239951
[FUWD] metagenome; unknown
105934
106010
+
Pro
TGG
[ENA]
¢þ
>WENV170869765
MDTB01181436
[MDTB] marine metagenome; seawater
756
830
+
Pro
TGG
[ENA]
¢þ
>C191000780
AP017977
Chlamydiota
Neochlamydia sp. S13 [AP017977]
1029027
1028950
-
Pro
TGG
-
¡û
>W1810235176
PPEU01000062
Chlamydiota
Candidatus Similichlamydia epinepheli epinepheli GCCT14 [PPEU]
1815
1891
+
Pro
TGG
[ENA]
¡û
>W1810235184
PPEU01000100
Chlamydiota
Candidatus Similichlamydia epinepheli epinepheli GCCT14 [PPEU]
2251
2175
-
Pro
TGG
[ENA]
¡û
>W1810763520
QQBG01000013
Chlamydiota
Candidatus Similichlamydia laticola laticola Hat2 [QQBG]
27339
27265
-
Pro
TGG
[ENA]
¡û
>SRA1023655
SRR035084.144409
454 Sequencing (SRP001805)
495
419
-
Pro
TGG
[SRA]
>C151104608
LN846980
Chlamydiota
Chlamydia pneumoniae [LN846980]
409846
409920
+
Pro
TGG
[Ensembl]
¡û
>C151104646
LN846995
Chlamydiota
Chlamydia pneumoniae [LN846995]
409868
409942
+
Pro
TGG
[Ensembl]
¡û
>C151104684
LN846996
Chlamydiota
Chlamydia pneumoniae [LN846996]
409845
409919
+
Pro
TGG
[Ensembl]
¡û
>C151104722
LN847000
Chlamydiota
Chlamydia pneumoniae [LN847000]
409845
409919
+
Pro
TGG
[Ensembl]
¡û
>C151104760
LN847221
Chlamydiota
Chlamydia pneumoniae [LN847221]
409841
409915
+
Pro
TGG
[Ensembl]
¡û
>C151104798
LN847257
Chlamydiota
Chlamydia pneumoniae [LN847257]
409845
409919
+
Pro
TGG
[Ensembl]
¡û
>W10107300
ACZE01000020
Chlamydiota
Parachlamydia acanthamoebae str. Hall's coccus [ACZE]
200914
200988
+
Pro
TGG
[ENA]
¡û
>W1510004640
BAWW01000005
Chlamydiota
Parachlamydia acanthamoebae Bn9 [BAWW]
172786
172860
+
Pro
TGG
[ENA]
¡û
>C10103810
CP001713
Chlamydiota
Chlamydia pneumoniae LPCoLN [CP001713]
433075
433001
-
Pro
TGG
[Ensembl]
¡û
>C10105612
CP001928
Chlamydiota
Waddlia chondrophila WSU 86-1044 [CP001928]
1081422
1081348
-
Pro
TGG
[Ensembl]
¡û
>W1510667340
CWGJ01000026
Chlamydiota
Estrella lausannensis CRIB-30 [CWGJ]
153820
153743
-
Pro
TGG
[ENA]
¡û
>W11109589
ACZE01000020
Chlamydiota
Parachlamydia acanthamoebae str. Hall's coccus [ACZE]
200914
200988
+
Pro
TGG
[ENA]
¡û
>W1511358794
JRXI01000099
Chlamydiota
Neochlamydia sp. TUME1 [JRXI]
22916
22994
+
Pro
TGG
[ENA]
¡û
>W1511360606
JSAN01000082
Chlamydiota
Candidatus Protochlamydia amoebophila amoebophila EI2 [JSAN]
63364
63442
+
Pro
TGG
[ENA]
¡û
>W1511364948
JSDQ01000063
Chlamydiota
Neochlamydia sp. EPS4 [JSDQ]
18155
18077
-
Pro
TGG
[ENA]
¡û
>WENV050820
AACY022905899
Marine microbial communities from Global Ocean Sampling (GOS)
314
237
-
Pro
TGG
[ENA]
>C161106389
LN847241
Chlamydiota
Chlamydia pneumoniae [LN847241]
409844
409918
+
Pro
TGG
[Ensembl]
¡û
>C161107104
LN879502
Chlamydiota
Candidatus Protochlamydia naegleriophila KNic [LN879502]
948961
948885
-
Pro
TGG
[Ensembl]
¡û
>WENV069259
AACY023758914
Marine microbial communities from Global Ocean Sampling (GOS)
248
169
-
Pro
TGG
[ENA]
>W1610949706
LVEB01000001
Chlamydiota
Waddlia chondrophila WSU 86-1044 [LVEB]
106664
106590
-
Pro
TGG
[ENA]
¡û
>W1710064128
BCPZ01000086
Chlamydiota
Candidatus Protochlamydia sp. W-9 [BCPZ]
28489
28413
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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