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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.128053 (94 seq.)
>W1711221622
LXRG01000173
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
46387
46473
+
Leu
CAG
[ENA]
¡û
>W1711434594
MINL01000001
Gammaproteobacteria
Halomonas sp. QHL1 [MINL]
1491996
1492082
+
Leu
CAG
[ENA]
¡û
>W131095858
AOPO01000008
Gammaproteobacteria
Halomonas titanicae BH1 [AOPO]
162709
162623
-
Leu
CAG
[ENA]
¡û
>W131174793
ARIT01000009
Gammaproteobacteria
Halomonas zhanjiangensis DSM 21076 [ARIT]
37871
37957
+
Leu
CAG
[ENA]
¡û
>WENV182548790
OJBX01000156
[OJBX] seawater metagenome; Sea water
47494
47580
+
Leu
CAG
[ENA]
¡û
>WENV182572659
OJFM01000641
[OJFM] seawater metagenome; Sea water
182
96
-
Leu
CAG
[ENA]
¡û
>WENV182575939
OJFX01000606
[OJFX] seawater metagenome; Sea water
2792
2706
-
Leu
CAG
[ENA]
¡û
>WENV182591153
OJIL01000052
[OJIL] seawater metagenome; Sea water
4434
4520
+
Leu
CAG
[ENA]
¡û
>WENV182591491
OJIO01000187
[OJIO] seawater metagenome; Sea water
49328
49242
-
Leu
CAG
[ENA]
¡û
>WENV182593133
OJIT01000350
[OJIT] seawater metagenome; Sea water
7652
7738
+
Leu
CAG
[ENA]
¡û
>W141275885
JADJ01000005
Gammaproteobacteria
Halomonas sp. 23_GOM-1509m [JADJ]
140513
140427
-
Leu
CAG
[ENA]
¡û
>WENV170112264
CEGE01000490
[CEGE] microbial mat metagenome; grass silage
45919
46005
+
Leu
CAG
[ENA]
¡û
>WENV170112571
CEGF01004122
[CEGF] microbial mat metagenome; grass silage
999
1085
+
Leu
CAG
[ENA]
¡û
>WENV170672372
LAZR01000083
[LAZR] marine sediment metagenome; Loki non-amplified sample from Loki's castle hydrothermal vent sediment
78528
78442
-
Leu
CAG
[ENA]
¡û
>WENV170675592
LDZP01000083
[LDZP] terrestrial metagenome; oil reservoir sample I1
73653
73739
+
Leu
CAG
[ENA]
¡û
>WENV170692230
LGOV01001383
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
7303
7389
+
Leu
CAG
[ENA]
¡û
>C191007751
AP019416
Gammaproteobacteria
Halomonas olivaria TYRC17 [AP019416]
3103754
3103840
+
Leu
CAG
-
¡û
>C191165490
CP039374
Gammaproteobacteria
Halomonas titanicae ANRCS81 [CP039374]
3603029
3602943
-
Leu
CAG
-
¡û
>W141555805
JHQL01000004
Gammaproteobacteria
Halomonas alkaliantarctica [JHQL]
45467
45553
+
Leu
CAG
[ENA]
¡û
>W141564657
JIAY01000011
Gammaproteobacteria
Halomonas sp. 19A_GOM-1509m [JIAY]
144959
144873
-
Leu
CAG
[ENA]
¡û
>W141754462
JNVS01000030
Gammaproteobacteria
Halomonas sp. KO116 [JNVS]
186
100
-
Leu
CAG
[ENA]
¡û
>W141818906
JQLV01000002
Gammaproteobacteria
Halomonas sp. TG39a [JQLV]
196514
196600
+
Leu
CAG
[ENA]
¡û
>W1910006944
BBQX01000019
Gammaproteobacteria
Halomonas sp. MBEE15 [BBQX]
30883
30969
+
Leu
CAG
[ENA]
¡û
>W1911148572
NPEY01000009
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
6138
6224
+
Leu
CAG
[ENA]
¡û
>W1911148573
NPEY01000009
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
6285
6371
+
Leu
CAG
[ENA]
¡û
>W1911203570
NRGW01000001
Gammaproteobacteria
Halomonas sp. JB37 [NRGW]
1777175
1777089
-
Leu
CAG
[ENA]
¡û
>W1911411734
NWUX01000023
Gammaproteobacteria
Halomonas sp. MBT G8648 [NWUX]
53989
53903
-
Leu
CAG
[ENA]
¡û
>W1810156484
PJBI01000050
Gammaproteobacteria
Halomonas sp. Choline-3u-9 [PJBI]
39983
40069
+
Leu
CAG
[ENA]
¡û
>W1810157234
PJBT01000191
Gammaproteobacteria
Halomonas sp. MES3-P3E [PJBT]
55816
55730
-
Leu
CAG
[ENA]
¡û
>W1810364677
PVTK01000008
Gammaproteobacteria
Halomonas songnenensis CGMCC 1.12152 [PVTK]
159085
158999
-
Leu
CAG
[ENA]
¡û
>PL201000464
CP040452
Gammaproteobacteria
Halomonas sp. PA16-9 plasmid:p_unnamed1 [CP040452]
1312716
1312802
+
Leu
CAG
[ENA]
¡û
>C151075886
CP011052
Gammaproteobacteria
Halomonas sp. KO116 [CP011052]
1759255
1759169
-
Leu
CAG
[Ensembl]
¡û
>C151104180
LN813019
Gammaproteobacteria
Halomonas sp. R57-5 [LN813019]
1849904
1849818
-
Leu
CAG
-
¡û
>W2010075302
BBQX01000019
Gammaproteobacteria
Halomonas sp. MBEE15 [BBQX]
30883
30969
+
Leu
CAG
[ENA]
¡û
>W2010103634
BJXV01000023
Gammaproteobacteria
Halovibrio variabilis NBRC 102410 [BJXV]
8770
8684
-
Leu
CAG
[ENA]
¡û
>W2010311131
CABWMN010000030
Gammaproteobacteria
Halomonas sp. 98 [CABWMN]
586898
586984
+
Leu
CAG
[ENA]
¡û
>W2010311170
CABWMO010000016
Gammaproteobacteria
Halomonas sp. 153 [CABWMO]
83560
83646
+
Leu
CAG
[ENA]
¡û
>W2010640496
JABWCV010000001
Gammaproteobacteria
Halomonas sp. QX-1 [JABWCV]
245461
245375
-
Leu
CAG
[ENA]
¡û
>W2010643352
JABWTB010000004
Gammaproteobacteria
Halomonas titanicae TAT1 [JABWTB]
280170
280084
-
Leu
CAG
[ENA]
¡û
>W2010673403
JACCDE010000010
Gammaproteobacteria
Halomonas glaciei DD39 [JACCDE]
63016
63102
+
Leu
CAG
[ENA]
¡û
>W2010676005
JACCGK010000005
Gammaproteobacteria
Halomonas sp. QX-2 [JACCGK]
241100
241014
-
Leu
CAG
[ENA]
¡û
>W2011021503
NPEY01000009
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
6138
6224
+
Leu
CAG
[ENA]
¡û
>W2011021504
NPEY01000009
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
6285
6371
+
Leu
CAG
[ENA]
¡û
>W2011049083
NRGW01000001
Gammaproteobacteria
Halomonas sp. JB37 [NRGW]
1777175
1777089
-
Leu
CAG
[ENA]
¡û
>W2011138235
NWUX01000023
Gammaproteobacteria
Halomonas sp. MBT G8648 [NWUX]
53989
53903
-
Leu
CAG
[ENA]
¡û
>W2011510812
RZHD01000005
Gammaproteobacteria
Halomonas sp. RC [RZHD]
432685
432771
+
Leu
CAG
[ENA]
¡û
>W2011510865
RZHE01000006
Gammaproteobacteria
Halomonas sp. MC [RZHE]
55149
55235
+
Leu
CAG
[ENA]
¡û
>W2011510975
RZHG01000012
Gammaproteobacteria
Halomonas sp. DSM 19434 [RZHG]
47161
47247
+
Leu
CAG
[ENA]
¡û
>W2011510976
RZHG01000012
Gammaproteobacteria
Halomonas sp. DSM 19434 [RZHG]
47358
47444
+
Leu
CAG
[ENA]
¡û
>W2011657125
SOCZ01000001
Gammaproteobacteria
Halomonas alkaliantarctica CRSS [SOCZ]
577093
577007
-
Leu
CAG
[ENA]
¡û
>W2011978532
VCQL01000010
Gammaproteobacteria
Halomonas sp. ATBC28 [VCQL]
47654
47568
-
Leu
CAG
[ENA]
¡û
>W2012094223
VNFE01000003
Gammaproteobacteria
Halomonas titanicae SM1922 [VNFE]
49316
49402
+
Leu
CAG
[ENA]
¡û
>W2012352292
WJPH01000002
Gammaproteobacteria
Halomonas sp. MG34 [WJPH]
41050
41136
+
Leu
CAG
[ENA]
¡û
>W2110098281
CAJFDU010000002
Gammaproteobacteria
Halomonas sp. 113 [CAJFDU]
228265
228351
+
Leu
CAG
[ENA]
¡û
>W2110098400
CAJFDW010000002
Gammaproteobacteria
Halomonas sp. 59 [CAJFDW]
203554
203640
+
Leu
CAG
[ENA]
¡û
>W2110098543
CAJFDZ010000003
Gammaproteobacteria
Halomonas sp. 156 [CAJFDZ]
108175
108089
-
Leu
CAG
[ENA]
¡û
>W2110098696
CAJFEC010000006
Gammaproteobacteria
Halomonas sp. I3 [CAJFEC]
48719
48805
+
Leu
CAG
[ENA]
¡û
>W2110177000
JABFAT010000010
Gammaproteobacteria
Halomonas sp. KRD171 [JABFAT]
48316
48402
+
Leu
CAG
[ENA]
¡û
>W2110188345
JABUYY010000006
Gammaproteobacteria
Halomonas sp. FME64 [JABUYY]
135811
135725
-
Leu
CAG
[ENA]
¡û
>W2110188447
JABUZA010000012
Gammaproteobacteria
Halomonas sp. FME66 [JABUZA]
58069
57983
-
Leu
CAG
[ENA]
¡û
>W2110220280
JACIVL010000014
Gammaproteobacteria
Halomonas neptunia DSM 15720 [JACIVL]
35904
35990
+
Leu
CAG
[ENA]
¡û
>W2110546371
JAGGRM010000005
Gammaproteobacteria
Halomonas sp. ISL-104 [JAGGRM]
210003
209917
-
Leu
CAG
[ENA]
¡û
>W2110546414
JAGGRN010000003
Gammaproteobacteria
Halomonas sp. ISL-106 [JAGGRN]
46873
46959
+
Leu
CAG
[ENA]
¡û
>W2110546505
JAGGRO010000029
Gammaproteobacteria
Halomonas sp. ISL-56 [JAGGRO]
72415
72329
-
Leu
CAG
[ENA]
¡û
>W2110546556
JAGGRP010000092
Gammaproteobacteria
Halomonas sp. ISL-60 [JAGGRP]
1706
1620
-
Leu
CAG
[ENA]
¡û
>W2110577309
JAGWDL010000009
Gammaproteobacteria
Halomonas boliviensis kknpp38 [JAGWDL]
46916
47002
+
Leu
CAG
[ENA]
¡û
>W2110640815
JAHRFY010000008
Gammaproteobacteria
Halomonadaceae bacterium MT13 [JAHRFY]
59388
59302
-
Leu
CAG
[ENA]
¡û
>W2110640835
JAHRFZ010000001
Gammaproteobacteria
Halomonadaceae bacterium MT32 [JAHRFZ]
258538
258452
-
Leu
CAG
[ENA]
¡û
>C211119376
CP059082
Gammaproteobacteria
Halomonas titanicae SOB56 [CP059082]
2853218
2853132
-
Leu
CAG
-
¡û
>C211361203
CP077941
Gammaproteobacteria
Halomonadaceae bacterium MT13 [CP077941]
2328901
2328987
+
Leu
CAG
-
¡û
>C231136144
CP074200
Gammaproteobacteria
Halomonas sp. FeN2 [CP074200]
808896
808982
+
Leu
CAG
-
¡û
>C231167528
CP080627
Gammaproteobacteria
Halomonas qaidamensis XH36 [CP080627]
2622010
2622096
+
Leu
CAG
-
¡û
>C231226794
CP086344
Gammaproteobacteria
Halomonas profundus 13 [CP086344]
3304026
3304112
+
Leu
CAG
-
¡û
>C231375921
CP096973
Gammaproteobacteria
Halomonas sp. ZZQ-149 [CP096973]
2761065
2760979
-
Leu
CAG
-
¡û
>W2110766592
RRZB01000043
Gammaproteobacteria
Halomonas sp. FME20 [RRZB]
181
95
-
Leu
CAG
[ENA]
¡û
>W2110766694
RRZD01000013
Gammaproteobacteria
Halomonas sp. FME1 [RRZD]
91608
91522
-
Leu
CAG
[ENA]
¡û
>C231534350
CP110535
Gammaproteobacteria
Halomonas sp. BDJS001 [CP110535]
3118142
3118228
+
Leu
CAG
-
¡û
>C231649491
CP122961
Gammaproteobacteria
Halomonas alkaliantarctica MSP3 [CP122961]
2790612
2790698
+
Leu
CAG
-
¡û
>W2130009110
CAJSTI010003293
Gammaproteobacteria
Halomonas elongata [CAJSTI]
1
87
+
Leu
CAG
[ENA]
¡û
>C241167492
CP054580
Gammaproteobacteria
Vreelandella titanicae GPM3 [CP054580]
2264089
2264175
+
Leu
CAG
-
¡û
>C241295120
CP130610
Gammaproteobacteria
Halomonas sp. HAL1 [CP130610]
2784932
2785018
+
Leu
CAG
-
¡û
>W1511479184
JWHY01000003
Gammaproteobacteria
Halomonas sp. KHS3 [JWHY]
40980
41066
+
Leu
CAG
[ENA]
¡û
>W1511541332
JZEM01000005
Gammaproteobacteria
Halomonas meridiana R1t3 [JZEM]
113525
113439
-
Leu
CAG
[ENA]
¡û
>W11180609
AGIB01000075
Gammaproteobacteria
Halomonas sp. HAL1 [AGIB]
56350
56264
-
Leu
CAG
[ENA]
¡û
>W121016449
AGQZ01000049
Gammaproteobacteria
Halomonas boliviensis LC1 [AGQZ]
41556
41642
+
Leu
CAG
[ENA]
¡û
>W121016450
AGQZ01000049
Gammaproteobacteria
Halomonas boliviensis LC1 [AGQZ]
41703
41789
+
Leu
CAG
[ENA]
¡û
>W121016452
AGQZ01000049
Gammaproteobacteria
Halomonas boliviensis LC1 [AGQZ]
41997
42083
+
Leu
CAG
[ENA]
¡û
>W121016453
AGQZ01000049
Gammaproteobacteria
Halomonas boliviensis LC1 [AGQZ]
42144
42230
+
Leu
CAG
[ENA]
¡û
>W121016455
AGQZ01000049
Gammaproteobacteria
Halomonas boliviensis LC1 [AGQZ]
48982
49068
+
Leu
CAG
[ENA]
¡û
>W1610612224
LGEN01000010
Gammaproteobacteria
Halomonas sp. 54_146 [LGEN]
73653
73739
+
Leu
CAG
[ENA]
¡û
>W1611006091
LXRG01000173
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
46387
46473
+
Leu
CAG
[ENA]
¡û
>W1710518744
FNEF01000015
Gammaproteobacteria
Halomonas titanicae DSM 26667 [FNEF]
87952
87866
-
Leu
CAG
[ENA]
¡û
>W1710628336
JPUA01000011
Gammaproteobacteria
Halomonas campaniensis [JPUA]
122411
122325
-
Leu
CAG
[ENA]
¡û
>W1710733730
LGEN01000010
Gammaproteobacteria
Halomonas sp. 54_146 [LGEN]
73653
73739
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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