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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.128202 (4 seq.)
>WENV181374195
OFQY01002706
[OFQY] wastewater metagenome; Exp Tend VB 10WW
4463
4383
-
Leu
AAG
[ENA]
¡û
>WENV181383090
OFRG01011289
[OFRG] wastewater metagenome; WWTP Verbania (Effluent)
225
145
-
Leu
AAG
[ENA]
¡û
>WENV181387804
OFRM01001468
[OFRM] wastewater metagenome; Exp Tend VB 0WW
1683
1603
-
Leu
AAG
[ENA]
¡û
>WENV181398853
OFSE01002876
[OFSE] wastewater metagenome; Exp Tend VB 50WW
3087
3007
-
Leu
AAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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