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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.128251 (114 seq.)
>W1711124114
LUJS01000043
Bacteroidota
Bacteroidales bacterium M8 [LUJS]
3451
3374
-
Pro
TGG
[ENA]
¡û
>W1711124239
LUJX01000041
Bacteroidota
Bacteroidales bacterium M13 [LUJX]
8604
8527
-
Pro
TGG
[ENA]
¡û
>W1711629348
MPOV01000087
Bacteroidota
Proteiniphilum sp. EBM-39 [MPOV]
29022
28945
-
Pro
TGG
[ENA]
¡û
>C171129288
LT608328
Bacteroidota
Petrimonas mucosa ING2-E5A [LT608328]
1374829
1374904
+
Pro
TGG
-
¡û
>WENV180156194
OAUV01002429
[OAUV] human gut metagenome; faeces
4831
4756
-
Pro
TGG
[ENA]
¢þ
>WENV180200627
OBAF01000011
[OBAF] human gut metagenome; human gut
103621
103696
+
Pro
TGG
[ENA]
¢þ
>WENV180215218
OBAQ01000299
[OBAQ] human gut metagenome; human gut
6030
5955
-
Pro
TGG
[ENA]
¢þ
>WENV180284617
OBID01070772
[OBID] metagenome; sludge
110
35
-
Pro
TGG
[ENA]
¢þ
>WENV180321587
OBKR01000150
[OBKR] human gut metagenome; feces
85884
85959
+
Pro
TGG
[ENA]
¢þ
>WENV180326406
OBKS01070543
[OBKS] human gut metagenome; human gut
79
154
+
Pro
TGG
[ENA]
¢þ
>WENV180334067
OBLF01004463
[OBLF] metagenome; feces
7086
7161
+
Pro
TGG
[ENA]
¢þ
>WENV180340549
OBLI01029427
[OBLI] pig gut metagenome; faeces
1729
1804
+
Pro
TGG
[ENA]
¢þ
>WENV180449152
OBXF01003724
[OBXF] human gut metagenome; faeces
3323
3398
+
Pro
TGG
[ENA]
¢þ
>WENV180811234
ODJN01000030
[ODJN] human metagenome; G_DNA_Stool
163521
163596
+
Pro
TGG
[ENA]
¢þ
>WENV180849253
ODKV01000183
[ODKV] human metagenome; G_DNA_Stool
59948
59873
-
Pro
TGG
[ENA]
¢þ
>WENV180905270
ODPF01009516
[ODPF] human metagenome; G_DNA_Stool
2546
2621
+
Pro
TGG
[ENA]
¢þ
>WENV180955605
ODUK01000018
[ODUK] human metagenome; G_DNA_Stool
275444
275519
+
Pro
TGG
[ENA]
¢þ
>WENV181262456
OFFY01005482
[OFFY] mouse gut metagenome; faeces
3059
3134
+
Pro
TGG
[ENA]
¢þ
>WENV181284050
OFGR01000017
[OFGR] mouse gut metagenome; faeces
89240
89165
-
Pro
TGG
[ENA]
¢þ
>WENV181377087
OFRA01002266
[OFRA] wastewater metagenome; Lake Maggiore Verbania
915
840
-
Pro
TGG
[ENA]
¢þ
>WENV181493934
OGGB01000013
[OGGB] metagenome; Human gut stool
251
174
-
Pro
TGG
[ENA]
¢þ
>WENV181504348
OGGJ01059829
[OGGJ] metagenome; Human gut stool
411
336
-
Pro
TGG
[ENA]
¢þ
>WENV181674426
OGOO01068118
[OGOO] human gut metagenome; faeces
395
320
-
Pro
TGG
[ENA]
¢þ
>WENV181678548
OGOR01001195
[OGOR] human gut metagenome; faeces
10518
10443
-
Pro
TGG
[ENA]
¢þ
>WENV181692132
OGOZ01068883
[OGOZ] human gut metagenome; faeces
622
547
-
Pro
TGG
[ENA]
¢þ
>WENV181748134
OGQO01000785
[OGQO] human gut metagenome; faeces
228
151
-
Pro
TGG
[ENA]
¢þ
>WENV181767684
OGRA01000004
[OGRA] human gut metagenome; faeces
163560
163635
+
Pro
TGG
[ENA]
¢þ
>WENV181829767
OGUN01060487
[OGUN] human gut metagenome; faeces
28
103
+
Pro
TGG
[ENA]
¢þ
>WENV182147746
OHLE01000247
[OHLE] human gut metagenome; feces
17578
17653
+
Pro
TGG
[ENA]
¢þ
>WENV182208911
OHPY01008228
[OHPY] human gut metagenome; feces
934
859
-
Pro
TGG
[ENA]
¢þ
>WENV182266078
OHTX01010961
[OHTX] human gut metagenome; feces
873
798
-
Pro
TGG
[ENA]
¢þ
>WENV182416479
OIGD01001501
[OIGD] human gut metagenome; human gut
5361
5286
-
Pro
TGG
[ENA]
¢þ
>WENV182525159
OIWT01001429
[OIWT] human gut metagenome; faeces
13651
13726
+
Pro
TGG
[ENA]
¢þ
>WENV182530993
OIWV01021044
[OIWV] human gut metagenome; faeces
145
70
-
Pro
TGG
[ENA]
¢þ
>WENV182533502
OIXA01029291
[OIXA] human gut metagenome; faeces
1939
2014
+
Pro
TGG
[ENA]
¢þ
>WENV182534134
OIXG01000166
[OIXG] human gut metagenome; faeces
74754
74829
+
Pro
TGG
[ENA]
¢þ
>WENV182536897
OIXH01002155
[OIXH] human gut metagenome; faeces
5118
5043
-
Pro
TGG
[ENA]
¢þ
>WENV182628652
OJKQ01022345
[OJKQ] metagenome; faeces
164
239
+
Pro
TGG
[ENA]
¢þ
>WENV182637279
OJLA01000930
[OJLA] metagenome; faeces
5457
5534
+
Pro
TGG
[ENA]
¢þ
>WENV182638738
OJLA01023007
[OJLA] metagenome; faeces
1075
1150
+
Pro
TGG
[ENA]
¢þ
>WENV182653427
OJMI01000148
[OJMI] human gut metagenome; feces
4758
4683
-
Pro
TGG
[ENA]
¢þ
>WENV182661853
OJMN01003927
[OJMN] human gut metagenome; feces
3233
3308
+
Pro
TGG
[ENA]
¢þ
>WENV182667301
OJNI01001588
[OJNI] human gut metagenome; feces
9626
9701
+
Pro
TGG
[ENA]
¢þ
>WENV182675562
OJNQ01010534
[OJNQ] human gut metagenome; feces
2815
2740
-
Pro
TGG
[ENA]
¢þ
>WENV182676869
OJNR01001449
[OJNR] human gut metagenome; human gut
875
800
-
Pro
TGG
[ENA]
¢þ
>WENV182683039
OJNW01049373
[OJNW] human gut metagenome; human gut
56
131
+
Pro
TGG
[ENA]
¢þ
>WENV182684649
OJNY01000841
[OJNY] human gut metagenome; human gut
7839
7914
+
Pro
TGG
[ENA]
¢þ
>WENV182703321
OJOS01007700
[OJOS] human gut metagenome; stool sample
1210
1285
+
Pro
TGG
[ENA]
¢þ
>WENV182714617
OJPH01002184
[OJPH] human gut metagenome; stool sample
500
425
-
Pro
TGG
[ENA]
¢þ
>WENV182729564
OJPX01033848
[OJPX] human gut metagenome; stool sample
466
541
+
Pro
TGG
[ENA]
¢þ
>WENV182747702
OJQV01018599
[OJQV] human gut metagenome; stool sample
649
574
-
Pro
TGG
[ENA]
¢þ
>WENV182756551
OJRG01001623
[OJRG] human gut metagenome; stool sample
4981
5056
+
Pro
TGG
[ENA]
¢þ
>WENV182764689
OJRQ01000023
[OJRQ] human gut metagenome; stool sample
101474
101399
-
Pro
TGG
[ENA]
¢þ
>WENV182948869
OKVP01005014
[OKVP] human gut metagenome; human gut
2566
2641
+
Pro
TGG
[ENA]
¢þ
>WENV182969214
OKXB01014427
[OKXB] human gut metagenome; human gut
1706
1631
-
Pro
TGG
[ENA]
¢þ
>WENV183027669
OLFV01000240
[OLFV] human gut metagenome; faeces
54450
54375
-
Pro
TGG
[ENA]
¢þ
>WENV183033435
OLFY01003431
[OLFY] human gut metagenome; faeces
12659
12734
+
Pro
TGG
[ENA]
¢þ
>WENV183039541
OLGB01008754
[OLGB] human gut metagenome; faeces
4475
4400
-
Pro
TGG
[ENA]
¢þ
>WENV183041845
OLGD01001520
[OLGD] human gut metagenome; faeces
9705
9630
-
Pro
TGG
[ENA]
¢þ
>WENV183051732
OLGJ01001933
[OLGJ] human gut metagenome; faeces
8192
8267
+
Pro
TGG
[ENA]
¢þ
>WENV183072833
OLIT01006594
[OLIT] human gut metagenome; feces
1851
1926
+
Pro
TGG
[ENA]
¢þ
>WENV183078785
OLIX01004538
[OLIX] human gut metagenome; feces
3912
3987
+
Pro
TGG
[ENA]
¢þ
>WENV183082018
OLJA01040059
[OLJA] human gut metagenome; human gut
110
35
-
Pro
TGG
[ENA]
¢þ
>WENV183163890
OLOW01040926
[OLOW] human gut metagenome; faeces
13
88
+
Pro
TGG
[ENA]
¢þ
>WENV183164672
OLOX01000653
[OLOX] human gut metagenome; faeces
35714
35789
+
Pro
TGG
[ENA]
¢þ
>WENV183271084
OLRV01056701
[OLRV] human gut metagenome; faeces
126
51
-
Pro
TGG
[ENA]
¢þ
>WENV183327003
OLWA01000036
[OLWA] human gut metagenome; faeces
72494
72419
-
Pro
TGG
[ENA]
¢þ
>WENV183353923
OLXB01003736
[OLXB] human gut metagenome; feces
218
143
-
Pro
TGG
[ENA]
¢þ
>WENV183373984
OLXY01014520
[OLXY] human gut metagenome; feces
158
83
-
Pro
TGG
[ENA]
¢þ
>WENV183381797
OLYK01000197
[OLYK] human gut metagenome; feces
14263
14338
+
Pro
TGG
[ENA]
¢þ
>WENV183404130
OLZW01005397
[OLZW] human gut metagenome; feces
1726
1651
-
Pro
TGG
[ENA]
¢þ
>WENV183410205
OMAH01004368
[OMAH] human gut metagenome; feces
178
103
-
Pro
TGG
[ENA]
¢þ
>WENV183414273
OMAO01011807
[OMAO] human gut metagenome; feces
70
145
+
Pro
TGG
[ENA]
¢þ
>WENV183446254
OMCQ01008651
[OMCQ] human gut metagenome; feces
721
796
+
Pro
TGG
[ENA]
¢þ
>WENV183458626
OMDM01037863
[OMDM] human gut metagenome; feces
41
116
+
Pro
TGG
[ENA]
¢þ
>WENV183461779
OMDV01000229
[OMDV] human gut metagenome; feces
14054
14129
+
Pro
TGG
[ENA]
¢þ
>WENV183462170
OMDW01000030
[OMDW] human gut metagenome; feces
15456
15531
+
Pro
TGG
[ENA]
¢þ
>WENV183496615
OMGM01006993
[OMGM] human gut metagenome; feces
506
581
+
Pro
TGG
[ENA]
¢þ
>WENV183533748
OOAE01001943
[OOAE] human gut metagenome; human gut
12613
12688
+
Pro
TGG
[ENA]
¢þ
>WENV183593266
OOCZ01047679
[OOCZ] human gut metagenome; human gut
177
100
-
Pro
TGG
[ENA]
¢þ
>WENV183652484
OQVU01051757
[OQVU] human gut metagenome; human gut
205
280
+
Pro
TGG
[ENA]
¢þ
>WENV183657743
OQWI01035556
[OQWI] human gut metagenome; human gut
119
44
-
Pro
TGG
[ENA]
¢þ
>WENV183774404
PPYF01035203
[PPYF] human gut metagenome; stool from patient with Crohn's disease
136
61
-
Pro
TGG
[ENA]
¢þ
>WENV170033304
CDYK01022412
[CDYK] gut metagenome; human stools
216621
216544
-
Pro
TGG
[ENA]
¢þ
>WENV170102392
CEAX01013444
[CEAX] gut metagenome; human stools
161306
161383
+
Pro
TGG
[ENA]
¢þ
>WENV170103586
CEAX01052833
[CEAX] gut metagenome; human stools
25603
25526
-
Pro
TGG
[ENA]
¢þ
>WENV170107359
CEBY01038667
[CEBY] gut metagenome; human stools
161273
161350
+
Pro
TGG
[ENA]
¢þ
>WENV170110410
CECF01026078
[CECF] gut metagenome; human stools
262
185
-
Pro
TGG
[ENA]
¢þ
>WENV170560940
CZCA01001297
[CZCA] anaerobic digester metagenome; anaerobic digester
15
92
+
Pro
TGG
[ENA]
¢þ
>WENV170563046
CZCB01009184
[CZCB] anaerobic digester metagenome; anaerobic digester
3176
3253
+
Pro
TGG
[ENA]
¢þ
>WENV170653908
JRYK01000367
[JRYK] activated sludge metagenome; activated biomass of a wastewaster treatment plant treating hydrocarbon contaminated
28902
28827
-
Pro
TGG
[ENA]
¢þ
>WENV170656032
JTFN01118790
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
221
296
+
Pro
TGG
[ENA]
¢þ
>WENV170656376
JTFO01011875
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
151
226
+
Pro
TGG
[ENA]
¢þ
>WENV170677118
LDZT01002650
[LDZT] terrestrial metagenome; oil reservoir sample SB1
94
169
+
Pro
TGG
[ENA]
¢þ
>WENV170679027
LDZU01006694
[LDZU] terrestrial metagenome; oil reservoir sample SB2
1268
1343
+
Pro
TGG
[ENA]
¢þ
>WENV170717780
LSQX01049595
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
75
152
+
Pro
TGG
[ENA]
¢þ
>WENV170718364
LSQX01072529
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1286
1361
+
Pro
TGG
[ENA]
¢þ
>WENV170719640
LSQX01121511
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2665
2742
+
Pro
TGG
[ENA]
¢þ
>WENV170720058
LSQX01139225
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
6104
6029
-
Pro
TGG
[ENA]
¢þ
>WENV170720719
LSQX01163621
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
4
79
+
Pro
TGG
[ENA]
¢þ
>C181102355
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
115404
115329
-
Pro
TGG
-
¡û
>C181123631
CP025931
Bacteroidota
Porphyromonas gingivalis TDC 60 [CP025931]
564956
565031
+
Pro
TGG
-
¡û
>C191175254
CP040121
Bacteroidota
Duncaniella sp. B8 [CP040121]
1535169
1535094
-
Pro
TGG
-
¡û
>W1911247383
NSLL01000013
Bacteroidota
Porphyromonas gingivalis WW5127 [NSLL]
47211
47136
-
Pro
TGG
[ENA]
¡û
>W1911247909
NSLX01000052
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
10777
10702
-
Pro
TGG
[ENA]
¡û
>W1810325190
PUEC01000011
Bacteroidota
Duncaniella muris DSM 103720 [PUEC]
41319
41394
+
Pro
TGG
[ENA]
¡û
>C11117307
AP012203
Bacteroidota
Porphyromonas gingivalis TDC60 [AP012203]
1965359
1965436
+
Pro
TGG
[Ensembl]
¡û
>W1610614533
LGHH01000237
Bacteroidota
Proteiniphilum sp. 51_7 [LGHH]
1268
1343
+
Pro
TGG
[ENA]
¡û
>W1610935153
LUJS01000043
Bacteroidota
Bacteroidales bacterium M8 [LUJS]
3451
3374
-
Pro
TGG
[ENA]
¡û
>W1610935278
LUJX01000041
Bacteroidota
Bacteroidales bacterium M13 [LUJX]
8604
8527
-
Pro
TGG
[ENA]
¡û
>WENV079399
AATC01001152
Gut microbiome of Mouse lean and obese (C57BL/6J; sample lean3, leptin genotype +/+)
433
356
-
Pro
TGG
[ENA]
>WENV079656
AATF01005178
Gut microbiome of Mouse lean and obese (C57BL/6J)
420
343
-
Pro
TGG
[ENA]
>W1710578566
FPBR01000018
Bacteroidota
Porphyromonadaceae bacterium KHP3R9 [FPBR]
45182
45107
-
Pro
TGG
[ENA]
¡û
>W1710735514
LGHH01000237
Bacteroidota
Proteiniphilum sp. 51_7 [LGHH]
1268
1343
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK